Gene Coch_1726 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1726 
Symbol 
ID8368172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2059190 
End bp2060206 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content43% 
IMG OID644984166 
Productputative DNA-binding/iron metalloprotein/AP endonuclease 
Protein accessionYP_003141832 
Protein GI256820553 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0533] Metal-dependent proteases with possible chaperone activity 
TIGRFAM ID[TIGR00329] metallohydrolase, glycoprotease/Kae1 family 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.0292985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA CCTATATATT AGCTATAGAA TCTTCTTGCG ATGACACTTC TGCTTCAGTG 
CTTTGCAATG ATAAAGTGCT TTCTAATGAG GTGGCAAATC AAGAGGTGCA TAAACAATAC 
GGCGGGGTAG TGCCCGAATT GGCTTCACGC GCTCACTTGC AAAATATAGT GCCCGTAGTG 
GCTCAAGCGC TCAAAAAAGC AGGAATAACC AAAGAAGAAC TTTCGGCTAT TGCTTTTACA 
AGAGGACCAG GATTAATGGG GTCGTTGCTC GTGGGGACTT CATTTGCTAA ATCGATGGCA 
ATGGGACTGA ATATCCCGCT CATTGAAGTG AACCACATGC AGGCACATAT TTTGGCACAT 
TTTATAGATG AAGGTCAGCC GAAACCCGAG TTCCCTTTTC TCGCAATGAC CATCAGCGGG 
GGGCATACCC AGATTGTGAA GGTAAACAGC TTTTTTGATA TGGAAGTGTT GGGCGAAACC 
CTTGATGATG CAGTAGGGGA GGCGTTCGAC AAAACCGCTA AAATATTAGG ACTTCCTTAC 
CCTGGAGGGC CTCTCATCGA TAAATACGCC CAAGAGGGTA ACCCTAAAGC CTTCAGTTTT 
TCTAAACCTA AAATATCTGG TCTCAACTTC AGTTTTTCGG GACTTAAAAC AGGTATTCTC 
TATTTTGTAC AGAAAAACAT TGAAGAAAAT CCTAATTTCA TAACTGAACA TTTAGCCGAC 
ATCTGTGCCT CGGTACAACA TACTATTGTG GAAATACTGA TGAGCAAACT CAAAAAAGCT 
GTAAAAGAAA CAGGTATCAA GCAAGTGGCT ATTGGGGGAG GGGTATCGGC TAATTCGGGT 
ATTCGCAATG CCCTCACAGC TTTAGGACAG CAGTACGGTT GGCAAACCTT TGTGCCTAAA 
TTTCAGTATT GTACCGATAA TGCAGCAATG ATAGGCATCG TAGGGTATCA CAAGTTTTTA 
GAAGGAAATT TTGTAGCACA AGAAGTAACT GCTCAAGCGC GACTTTCTTT TGATTAG
 
Protein sequence
MKNTYILAIE SSCDDTSASV LCNDKVLSNE VANQEVHKQY GGVVPELASR AHLQNIVPVV 
AQALKKAGIT KEELSAIAFT RGPGLMGSLL VGTSFAKSMA MGLNIPLIEV NHMQAHILAH 
FIDEGQPKPE FPFLAMTISG GHTQIVKVNS FFDMEVLGET LDDAVGEAFD KTAKILGLPY 
PGGPLIDKYA QEGNPKAFSF SKPKISGLNF SFSGLKTGIL YFVQKNIEEN PNFITEHLAD 
ICASVQHTIV EILMSKLKKA VKETGIKQVA IGGGVSANSG IRNALTALGQ QYGWQTFVPK 
FQYCTDNAAM IGIVGYHKFL EGNFVAQEVT AQARLSFD