Gene Coch_1522 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1522 
Symbol 
ID8367962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1809475 
End bp1810152 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content38% 
IMG OID644983957 
ProductPAS sensor protein 
Protein accessionYP_003141628 
Protein GI256820349 
COG category 
COG ID 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.533099 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAAT TTAAAAGTGC TGTACCTACA ATTGCAAGAC CCACTCCTAT TGACCGTGAA 
GTACAGTGGG ATAAGACCAA AGTACTCATC AGTGAAACAG ATGCGATTGG TACTATTACC 
AAAGTGAATG ATGTGTTTTG TGAGGTATCA CACTACACTG CTGAAGAACT CATAGGACAA 
CCTCATAACT TGATACGCCA CCCCGATATG CCAAAACTTA TTTTTAAGCT TCTTTGGGAT 
AACTTAAAGG CGGGAAATAA CTTTGTGGGT GTGATTAAGA ACTTAGCTAA AACAGGAGAA 
TACTACTGGG TGGTTACTGA TTTTGAAATG CGTCGTGATG CATCGGGTAA TATTACACAT 
TACATTGGCA GAAGAAGATC GGTGCCTGAA GCAGCGATTA AAGACTATTT GGCACCTTTC 
TATGATTCAC TTTTGAAAAT GGAGAGAATA GGGGGTGTAG AATTGAGCAG TCGTTTCTTT 
AAAAACTATT TGGCTAAGCA AGGAAAAGAT TATATCGATT TTGTGATAAG TATTATGTCA 
GAGGGTCAAA CTAAATTTAC AGCTGAAACC GTATCGGGTG TTGATAATAA CAACGTGACA 
GTATCTGACG ATATTTACCA AATGGATGAC TCGAAGAATG AAAAGCGCAA GAACTTCTTC 
GAGCGTTTGT TTAACTAA
 
Protein sequence
MSEFKSAVPT IARPTPIDRE VQWDKTKVLI SETDAIGTIT KVNDVFCEVS HYTAEELIGQ 
PHNLIRHPDM PKLIFKLLWD NLKAGNNFVG VIKNLAKTGE YYWVVTDFEM RRDASGNITH 
YIGRRRSVPE AAIKDYLAPF YDSLLKMERI GGVELSSRFF KNYLAKQGKD YIDFVISIMS 
EGQTKFTAET VSGVDNNNVT VSDDIYQMDD SKNEKRKNFF ERLFN