Gene Coch_1521 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1521 
Symbol 
ID8367961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1808743 
End bp1809429 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content36% 
IMG OID644983956 
Productputative PAS/PAC sensor protein 
Protein accessionYP_003141627 
Protein GI256820348 
COG category 
COG ID 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.950455 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAGAG ATTATAGAGA CATTAAGCTT ACTGTACAAC GTCCTACTCC TATTGACAAG 
GAGGTGAACT GGAATAAATC GTTGGTAGTG ATTAGTGAAA CTGATATTTA TGGTCGAATT 
ACCAATGTAA ACGATGTGTT TTGCAATGTT TGTGGCTATA GTGCTGCGGA AATGGTAGGG 
CAACCACATA GTATCATTCG CCACCCTGAT ATGCCTAAAC TGATTTTTAA ACTGCTTTGG 
GATAACCTTA AATTGGGGAA TAACTTTATT GGGGTGATTA AGAACTTAGC AAAATCAGGA 
GAGTATTATT GGGTAATCAC CGATTTTGAA ATGCGTAGAG ATGCTGATGG AAATATCACA 
CACTACATTG CACGCCGTAG ATCGGTGCCC AAAGGAGTAA TAGACAACTA TGTAGCTCCG 
TTTTATGATA CGCTTTTGAA GCTTGAGAAG ATAGGTGGAA TGGAACTTAG TACCCGTTTT 
TTCAAGAACT ACTTAGCTAA ACAAGGCAAG GATTATATTG ATTTCATTAT AGATATAATG 
AATGAAAATA GAGAAAATGT GTCTTTTGAA GAAAATCAAG TATCATCAGT AGATACTACA 
CAAGTGATTT CAGATGATAT TGTAACTATG AATGAGGCTC AAAACGAGAA ACGCAAGAGT 
TTCTTTGGTA GATTGTTTGT GCAATAA
 
Protein sequence
MIRDYRDIKL TVQRPTPIDK EVNWNKSLVV ISETDIYGRI TNVNDVFCNV CGYSAAEMVG 
QPHSIIRHPD MPKLIFKLLW DNLKLGNNFI GVIKNLAKSG EYYWVITDFE MRRDADGNIT 
HYIARRRSVP KGVIDNYVAP FYDTLLKLEK IGGMELSTRF FKNYLAKQGK DYIDFIIDIM 
NENRENVSFE ENQVSSVDTT QVISDDIVTM NEAQNEKRKS FFGRLFVQ