| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1442 |
|---|
| Symbol | |
|---|
| ID | 8367874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1692391 |
|---|
| End bp | 1694388 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644983870 |
|---|
| Product | excinuclease ABC subunit B |
|---|
| Protein accession | YP_003141549 |
|---|
| Protein GI | 256820270 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
|---|
| TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA ATATAGTTTC TGACTTTGCC CCTACGGGCG ACCAACCTCA GGCTATCGAC
CAATTGGTAA AAGGTATAGA GCGCAACGAT AAGTACCAAG TACTATTAGG TGTTACGGGC
TCTGGAAAGA CTTTTACTAT CGCTAATGTG GTGGAACGCA TTCAGCGTCC TACTCTTGTG
TTGGCACATA ATAAGACGCT GGCAGCCCAG TTGTATTCTG AATTTAAGGC TTTCTTCCCC
AATAACGCGG TGGAATACTT CGTCTCTTAC TACGACTACT ATCAGCCGGA AGCTTATATA
CCTTCCACAG GTACTTATAT CGAAAAAGAC CTCTCTATTA ACGATGAAAT TGAAAAACTG
CGTCTCAGTA CGACCTCTGC TTTGCTGTCG GGCAGGCGCG ATGTATTGGT TGTGGCATCT
GTGTCGTGTT TGTATGGTAT TGGTAACCCT GTGGAATTTC AAAAGAACGT GATTACCCTC
AAACAGGGTG ACGTACTCCC TCGTACCAAG CTGATGCATC GCCTTGTGCA AAGTCTCTAT
GCCCGAACGA CCGCCGAATT TAGGCACGGC AACTTCCGTA TCAAAGGCGA TGTGCTTGAT
GTCTTCCCAG GTTATGACGA CAACGCCTTT CGCATTCACT TTTTTGGTGA TGAAATTGAA
GAGATAGAAC AGTTTGACCC TACTACTAAT CACGTGTTAG ACCACTACCA GAGCCTTAAT
ATCTACCCCG CTAATATGTT CGTTACTTCC CCTGATATTC TCCAAAAAGC GATATGGAAC
ATTCAACAAG ATTTGGTGAA GCAAGTAGAG TTCTTTGAGG CTTTAGGCAA ACCCTTAGAA
GCCAAACGGC TGAAAGAACG CACCGAGTTC GACCTTGAGA TGATACGGGA ATTAGGGTAC
TGTTCGGGTA TTGAGAACTA CTCTCGCTAT TTGGACGGTA GAGAACCAGG CACACGTCCG
TTTTGCCTCA TAGATTACTT CCCCGATGAT TTCTTGATGG TTATCGACGA GAGTCACGTA
ACCGTCTCAC AAGTACACGC GATGTATGGT GGCGACCGCA GTAGGAAGGA GAATCTCGTG
GAATACGGTT TCCGATTGCC CGCTGCAATG GACAACCGTC CGTTGAAATT CGAGGAGTTT
GAAGCACTTC AAAACCAAGT GATTTACGTG AGTGCTACCC CAGCCGATTA TGAGCTCCAG
CAAACGCAAG GCGTGTACGT AGAGCAGGTG ATACGCCCCA CAGGATTGCT CGACCCCGAA
ATAGAAGTGC GTCCGAGTGC CAATCAAATA GATGACCTTG TGGAGGAAAT ACAACTGCGC
ACCGAAAAAG ACGAGCGTAT ATTAGTAACC ACCCTCACCA AGCGAATGGC AGAGGAACTT
ACCAAATACC TCACTCGCAT TGGTATTAGG TGTCGTTACA TTCACAGTGA TGTGGATACA
TTGGAACGCG TGGAGATTAT GCAAGACCTG CGCAAAGGAC TCTTTGATGT GCTCATAGGG
GTAAACCTCC TCCGTGAGGG CTTAGACCTG CCCGAAGTGT CGCTCGTCGC TATCCTCGAT
GCCGACAAAG AAGGCTTTTT GCGTTCCACT CGTTCGCTCA CTCAAACCGT AGGGCGGGCT
GCTCGCAACG TGAATGGTAA GGCAATAATG TACGCCGATA AGATTACTGA CAGTATGCAG
CGCACTATCG ATGATACTAA TTATCGTCGT GAAAAGCAAA TGAACTACAA CAAGGCACAC
AACATCACGC CTCAGCCTTT GCACAAGAAG ATAGAGAATA GCCTCAGCAA GAGCCCTATA
ACCGAATTTC ACTACGATCC GTCGTTTAAA GAGCGCACAG CTGCCGAAGC GCAATCGGTA
TATTTATCGG CTAAGGAGTT GGAAAAGAAA ATCAAAGAAA CCCGCAAACT GATGGAGGTA
GCTGCCAAAG AGCTGGATTT TGTAAAAGCT GCACAGTACA GAGATGAGCT GAAGAAATTG
CAGGAATTAG CAAATTAG
|
|---|
| Protein sequence | MKFNIVSDFA PTGDQPQAID QLVKGIERND KYQVLLGVTG SGKTFTIANV VERIQRPTLV
LAHNKTLAAQ LYSEFKAFFP NNAVEYFVSY YDYYQPEAYI PSTGTYIEKD LSINDEIEKL
RLSTTSALLS GRRDVLVVAS VSCLYGIGNP VEFQKNVITL KQGDVLPRTK LMHRLVQSLY
ARTTAEFRHG NFRIKGDVLD VFPGYDDNAF RIHFFGDEIE EIEQFDPTTN HVLDHYQSLN
IYPANMFVTS PDILQKAIWN IQQDLVKQVE FFEALGKPLE AKRLKERTEF DLEMIRELGY
CSGIENYSRY LDGREPGTRP FCLIDYFPDD FLMVIDESHV TVSQVHAMYG GDRSRKENLV
EYGFRLPAAM DNRPLKFEEF EALQNQVIYV SATPADYELQ QTQGVYVEQV IRPTGLLDPE
IEVRPSANQI DDLVEEIQLR TEKDERILVT TLTKRMAEEL TKYLTRIGIR CRYIHSDVDT
LERVEIMQDL RKGLFDVLIG VNLLREGLDL PEVSLVAILD ADKEGFLRST RSLTQTVGRA
ARNVNGKAIM YADKITDSMQ RTIDDTNYRR EKQMNYNKAH NITPQPLHKK IENSLSKSPI
TEFHYDPSFK ERTAAEAQSV YLSAKELEKK IKETRKLMEV AAKELDFVKA AQYRDELKKL
QELAN
|
|---|
| |