Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1438 |
Symbol | |
ID | 8367870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1687028 |
End bp | 1689079 |
Gene Length | 2052 bp |
Protein Length | 683 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644983866 |
Product | TGF-beta receptor type I/II extracellular region |
Protein accession | YP_003141545 |
Protein GI | 256820266 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3104] Dipeptide/tripeptide permease |
TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAAAA AGACAATTTT CGATACACAA GTATTAGGAC ATCCAGCGGG GCTGTTTGTG CTCTTCTTTA CAGAAATGTG GGAGCGTTTT TCGTTTTATG GAATGCGCGT ACTGCTCATC AACTTTCTTA CAATGACGCT TATAGGGTAT AACCCAGGAT GGGCGTGGAG TACTGAAAAC GCGGGTGCAC TCTTTGGTAC GTATGTTATG CTTCTTTACC TCACTCCTAT ACTTGGAGGT ATAATAGCCG ATAAGATTAC CGGCTACCGC TGGGCAGTAA TTATTGGGGC GGTTATTATC ACCTTAGGAC ACGTATCGAT GGCTTTTGAA ACTGAGGTTT CGCTCTATTT GGGACTTGCA CTCTTGGTGA TAGGAACGGG CTTTTTCAAA CCTAATATGG TGTCATTTGT ATCGGAAATG TACAAAGACC TACCCGAGAA GAAAGATGCT GCTTATACCA TCTTCTATAT GGGAGTAAAT TCTGGAGCTT TCTTTGGAAT GATGCTCTGC GGTTACTTGG CAGAACGCAT TGGGTGGAGT TGGGGTTTCG GTTTAGCAGG AGTGTTTATG CTCTTGGGAA CTATACAGTT TTGGTTTGCC AAACCTTTAT TTGGTTCAAT AGGATGTGAG CCACGCAAGC AAGAAAAAAA AGAGACTACA AATGATGCAA AACAAGAAGA GGAAAAACTC AATCCGTTTA CTACCCTAGA TAAGATATTG GTAGCGCTTT CGGCAATCAT AGGTATTGGC TATGCACTAA ACGACCCTCT CTCAAAAATA TGGAATATCG ACCTCTTTGG GTGGGCTGCT ACCTCAGGGC TTAAAGGGCA ATATGTGATG GTGATTGTAG GCTTAATAGC TTTCTTTTAC CTGATAGGTA GTCGCATAAT GCGTTATACT ACGATAGTGC GCGACCGTAT GCTCACTGTG GTCATCTTTG CCTTTTTTGT GGTGTTCTTT TGGTTGTCGT TTGAACAAGG AGCTTCGTCT TTGGTGATTT TTGCACGGGA TAATATAGAG CGTGAGCTAC ACGGTAATTG GGCAGTACTT TACAATATTT TCAATGCGCT ACTCACCGTG ATTCCACTAT TACTGATTAC CTACGTACTT TTCCTTTTGA TAAAGAAAAC CTACAAAAAG ATATTTCCTG CCGTAGTAGT GTTATTGGTG TGCTTTAGTC TTGTATGGGG CATTGCTTCG TGGATGCTAC AACGCGACTT CAAAACTACA GCTTACAGTG TGAGTTATCA AGCCTATGAA CAAACCGATA CACAAGGCAG AACTACTTAT ATCCCTATTA CTGAAGAAAA CAGAGTCGCT CGCCCTGATT TGAAAATCGT AGAACGTACT ACTATCATAG GAGTAGCTGA TTATCACCTA AAAGTAGGGC AAGAGATAAA ATTGCTGAGC AAGAACAACA AAAACACTTC GTTTGGCTAT GTAGATGCCG AAAAGGAACA GTGGGCAAAA CAGCGGGGAG CAGAGCTCAA TACTGACAAC GGGCTGATAG TTGCACAAGT GAAAGAAGAG CGCGATAACT GGGTAGAGAC GACTGTATCG TGGTTTTCTA TTCTGAATTC TTTCTTCATT ATTGCCTTAG CGAGCTTGTT CTCACGTTGG TGGGATAGCA AGTATAATCC ACCTGCTGCG ATGAAATACG GCATCGGACT GCTGATGCTC TCAGTAGGGT TTGGTTTACT CGCCTTAGGC TCTCACGGGG TAACTCACGG AGTAAAGGTG AGTATGTTAT GGCTTGTATT TGCTTATATG TTTAACACTA TGGGTGAGTT GTGTTTATCG CCTGTGGGGC TTTCGTACGT CTCGAAGCTT GTACCTGCAC GAATGATAGC ATTTATGTTT GGGGTATGGT ACCTTGCTGT AGCTATTGGT CATAAATTAG CAGCTGTACT GGGCGGACAG ATAGAGAATA TCACCCGTGA GTACAGTTTG AGTACTTTCT TTTTGATATT TACCATTGTG CCTGCCGTAG CAGGGGTACT CATTATTCTC ATCAATCCGT TTGTGAAGAA ACTGATGCAC GGAGTGAGGT AA
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Protein sequence | MTKKTIFDTQ VLGHPAGLFV LFFTEMWERF SFYGMRVLLI NFLTMTLIGY NPGWAWSTEN AGALFGTYVM LLYLTPILGG IIADKITGYR WAVIIGAVII TLGHVSMAFE TEVSLYLGLA LLVIGTGFFK PNMVSFVSEM YKDLPEKKDA AYTIFYMGVN SGAFFGMMLC GYLAERIGWS WGFGLAGVFM LLGTIQFWFA KPLFGSIGCE PRKQEKKETT NDAKQEEEKL NPFTTLDKIL VALSAIIGIG YALNDPLSKI WNIDLFGWAA TSGLKGQYVM VIVGLIAFFY LIGSRIMRYT TIVRDRMLTV VIFAFFVVFF WLSFEQGASS LVIFARDNIE RELHGNWAVL YNIFNALLTV IPLLLITYVL FLLIKKTYKK IFPAVVVLLV CFSLVWGIAS WMLQRDFKTT AYSVSYQAYE QTDTQGRTTY IPITEENRVA RPDLKIVERT TIIGVADYHL KVGQEIKLLS KNNKNTSFGY VDAEKEQWAK QRGAELNTDN GLIVAQVKEE RDNWVETTVS WFSILNSFFI IALASLFSRW WDSKYNPPAA MKYGIGLLML SVGFGLLALG SHGVTHGVKV SMLWLVFAYM FNTMGELCLS PVGLSYVSKL VPARMIAFMF GVWYLAVAIG HKLAAVLGGQ IENITREYSL STFFLIFTIV PAVAGVLIIL INPFVKKLMH GVR
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