| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1340 |
|---|
| Symbol | |
|---|
| ID | 8367771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 1572977 |
|---|
| End bp | 1573981 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644983767 |
|---|
| Product | virulence protein |
|---|
| Protein accession | YP_003141447 |
|---|
| Protein GI | 256820168 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3943] Virulence protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC AACAAAAAAT CATCATTTAT AAGACCGACG ACGGTAAGGT GAAAATCTCT
CTTTTTGCCA AAGACGGCTC GGTATGGTTG AACCAAAATC AGCTTGCTGA CCTTTTTGAC
ACCTCTGTTC CTAATATCAG TATGCACATA TCTAATATAC TAAAGGATAA TGAATTATCT
CCAAATTCAG TTATTAAGAA TTACTTAACA ACTGCCTGTG ATGGGAAGAA TTATGAAGTT
ACTTTTTACA GTTTGGATAT GATTCTGGCT ATTGGATTTA GGGTGCGTAG TAAGCGAGGA
GTTCAGTTCA GGCAATGGGC TAACCAGTAC TTGAAAGAAT TTATGGTGAA GGGATTTGTG
ATGGACGATG AACGGCTGAA AAACCCCGAT GGGCGACCTG ATTATTTCGA CGAATTACTC
GCCCGTATTC GCGACATTAG AGCTTCGGAA AAACGCTTCT ACCAAAAAAT AAGAGACTTA
TTTATGCTCA GTAGCGATTA TGATAAAACC GATAAGGCGA CCCAGATGTT TTATGCACAA
ACTCAAAATA AAATTCTATA CGCTATCACA GGTCAAACGG CTGCTGAATT GATTGTCAGT
CGTGCTGATG CTTCGCAAAA CAATATGGCA CTTACCTCGT GGGAGGGAAA CATAGTGAGG
AAAGGGGATA TTTACATAGC TAAGAATTAC CTTACTGATA ATGAGATTGA TAGCTTAAAT
CGGTTTGTAA TGGTATTCTT AGAATCGGCG GAATTAAGAG CTAAAAACCG ACAAGACATT
ACTATGGATT TCTGGCGTGA GAACATCGAT AGGATTATTG AATTCAACGA TAAAAAAGTA
CTAAAAGGCA ATGGCTCAGT GAGCAACGAA CAAATGAAAA CAATAGTGAG AAAAGTGTAT
GACGAGTTTG AAGTGAAACG GAAACAATAT GATGCTCAGC AAGCTGACTT AGAAGATTTA
AAAGAAATAG AAGAATTAGA AGCGCATATA AAACTGCTAA AATAA
|
|---|
| Protein sequence | MNTQQKIIIY KTDDGKVKIS LFAKDGSVWL NQNQLADLFD TSVPNISMHI SNILKDNELS
PNSVIKNYLT TACDGKNYEV TFYSLDMILA IGFRVRSKRG VQFRQWANQY LKEFMVKGFV
MDDERLKNPD GRPDYFDELL ARIRDIRASE KRFYQKIRDL FMLSSDYDKT DKATQMFYAQ
TQNKILYAIT GQTAAELIVS RADASQNNMA LTSWEGNIVR KGDIYIAKNY LTDNEIDSLN
RFVMVFLESA ELRAKNRQDI TMDFWRENID RIIEFNDKKV LKGNGSVSNE QMKTIVRKVY
DEFEVKRKQY DAQQADLEDL KEIEELEAHI KLLK
|
|---|
| |