Gene Coch_1335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1335 
Symbol 
ID8367766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1551316 
End bp1552650 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content41% 
IMG OID644983762 
ProductUDP-N-acetylmuramoylalanine/D-glutamate ligase 
Protein accessionYP_003141442 
Protein GI256820163 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTT TAGTAATATT AGGAGGTGGT GAAAGTGGTG TAGGAACTGC CATTCTCGGT 
AAACAAAAAG GCTGGGAAGT ATTCCTTTCC GATAAAGGTT CCCTAAAACC TCACTACCGC
GAAACTCTTA ACAAAGAAGG CATTCAGTGG GAAGAAGGCA CACACACCGA AGAGAAAATT
CTCTCAGCCG ATGTGATTAT GAAAAGCCCA GGTATCCCAG ATAAAGCACC TATCATCAAA
AAAGCTCACG AAAAAGGCAT TGCTGTGATT TCTGAAATAG AATTTGCAAG CCAATATACC
GATAGCCTCA TTGTAGGCAT CACAGGTAGT AATGGTAAAA CCACTACCAC CTTGCTCACT
TATCACATTT TCAAAGAAGC GGGATTGCAA GTGGGACTTG GCGGAAACAT AGGTTATAGC
TTCGCCGAAT TAGTAGCTAC CAAAAATCCA CCGTATTATG TACTCGAAAT CAGTAGTTTT
CAGTTAGACG GCATAGAGCA TTTCGCCCCC CATATCGCCG TGTTGCTTAA CATAACTCCT
GACCATCTCG ATAGGTACGA CTATAAGTTC GAAAACTATA TCGACTCTAA ATTCCGTATC
GCGATGAACC AAACTGAAAA TGATTACCTT ATCTATGATG CCGACGACGA GGTAATTACA
CAGTGGCTCA GCACCCATAC TATAAAATCT AAACTCATAC CTTTTTCTAT AGAGAAAGAA
CTCCCACAAG GAGCTTTCTT AAAAGATAAT AAAATATACA TTATGTTAGA GAATCAAACT
ACTGAAATCG ACGTTGAAGA AATTAGCCTT CGTGGCAAGC ACAACATTAA AAATACAATG
GCAGCAAGTG TAGCTGCTCG CTTGGTAAAT ATCCGCAACA ACTCATTGCG CGAAAGTCTC
AAAGGCTTTA AAGGTGCTCC CCACCGCCTC GAAGAGGTGA AAGTAGTAGA TGGCGTTACT
TACGTAAACG ACTCTAAAGC TACTAACGTA AATTCAGTAT TCTACGCTCT CGACACCATT
AAAACTCCTA TCGTGTGGAT AGTTGGCGGA CAAGACAAAG GCAACGACTA TAACTCTCTT
TTACCTTATG TACACGAAAA AGTAAGAGCT ATTGTATGCC TCGGAGTCGA TAATACCCCT
ATTATTCAAT CGTTTTACAA CACAATAGAC ACGCTTGTCG AAACTCGCTC AATGGACGAA
GCCGTGAAAT TAGCACAAAG TTTTGCTCAA GAAGGCGATA CAGTACTATT ATCCCCCGCT
TGCGCCAGCT TCGACCTCTT TAAAAACTAC GAAGAACGCG GAGACCTCTT TAAAGCAGCC
GTTCAGAAAC TGTAA
 
Protein sequence
MKRLVILGGG ESGVGTAILG KQKGWEVFLS DKGSLKPHYR ETLNKEGIQW EEGTHTEEKI 
LSADVIMKSP GIPDKAPIIK KAHEKGIAVI SEIEFASQYT DSLIVGITGS NGKTTTTLLT
YHIFKEAGLQ VGLGGNIGYS FAELVATKNP PYYVLEISSF QLDGIEHFAP HIAVLLNITP
DHLDRYDYKF ENYIDSKFRI AMNQTENDYL IYDADDEVIT QWLSTHTIKS KLIPFSIEKE
LPQGAFLKDN KIYIMLENQT TEIDVEEISL RGKHNIKNTM AASVAARLVN IRNNSLRESL
KGFKGAPHRL EEVKVVDGVT YVNDSKATNV NSVFYALDTI KTPIVWIVGG QDKGNDYNSL
LPYVHEKVRA IVCLGVDNTP IIQSFYNTID TLVETRSMDE AVKLAQSFAQ EGDTVLLSPA
CASFDLFKNY EERGDLFKAA VQKL