Gene Coch_1244 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1244 
Symbol 
ID8367673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1453315 
End bp1453863 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content43% 
IMG OID644983674 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_003141355 
Protein GI256820076 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.595096 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAA TCAGAACTAA GATAGAAGGC GTGGTGATTA TTGAGCCACA GGTGTTTTTT 
GACGGAAGAG GTTACTTTTT TGAATCGTTT TCGCAACAGC GATTTAATGA GTTAGTAAGC 
CCCACTGTAT TTGTACAAGA CAACGAATCG CAATCGACCT ATGGGGTATT GCGCGGATTA 
CACTTTCAGA AACCACCTTT TGCACAGGCT AAATTGGTGA GAGTCGTAAA AGGAGAAGTA 
CTTGATGTAG CAGTGGATTT GCGAAAAGAC TCACCTACCT TTGGGCAGTA TGAGTCTGTG 
ATACTAAACG AAGAAAACAA GCGCCAGTTT TTTATCCCGA GAGGTTTTGC TCACGGTTTT 
GCTGTATTGA GCGAAGAAGC TATTTTTCAA TACAAATGCG ACAATTACTA CGCTCCCGAG 
AGTGAGGGTA GTGTGCGCTG GGACGACCCT ACCATAGGTA TCGATTGGCG ACTACCAGCT 
GAGGTGATAC AACTTTCGGA GAAAGACAAG AAAGCGCCAT TACTGGTAGA GGCAAAAGGT 
AAAAGATAA
 
Protein sequence
MKVIRTKIEG VVIIEPQVFF DGRGYFFESF SQQRFNELVS PTVFVQDNES QSTYGVLRGL 
HFQKPPFAQA KLVRVVKGEV LDVAVDLRKD SPTFGQYESV ILNEENKRQF FIPRGFAHGF 
AVLSEEAIFQ YKCDNYYAPE SEGSVRWDDP TIGIDWRLPA EVIQLSEKDK KAPLLVEAKG 
KR