Gene Coch_1233 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1233 
Symbol 
ID8367662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1440820 
End bp1441629 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content44% 
IMG OID644983663 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_003141344 
Protein GI256820065 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATACCC TAATATCTAA ACAAATGGAA CTAAATCGTA TCAAAGGAAA AATCGCTTTT 
ATCTCGGGTG CCAGTAGTGG GATAGGTAAA GCGGTAGCCG AAAAGTTGGC ACAAATGGGC
GTTAATTTGA TTCTCTGCGC TCGTCGGGCT GAGGTATTGG CAGAACTGAA AGCAAAACTC
GAAAAAGAAC ACGCTGTGGA GGTTATAACC TTAGCTTTCG ACGTGAGAAA CTATCAAGAG
GTTGCGAAAA ATATCCAGTC CTTACCCGAA AAATGGCGAC AAATAGATAT ACTCATCAAC
AATGCGGGCT TGGCAATAGG ATTGCAACAC CTCTATACTT ACGCCATAGA AGATATAGAC
CAGATGATTG ACACCAACAT CAAAGGGTTT ACCTATATTG CCAACAGTGT GATTCCGCTA
ATGATTGCCA CCGACAAGGT GGGAACGATT GTGAACGTCG GGTCGGTAGC GGGTGAGATA
GCTTACCCCA ATGGCAGTAT TTATTGTGCG ACCAAGTTTG CTGTAAAAGC CCTAAGCGAT
GCGATGCGTA TAGAGCTAAT GGACAAGAAG CTGAAGGTAA CGACCGTAAA ACCAGGGTTG
GTAGAGACCA ATTTCAGCAA GGTGCGTTTC AAAGGCGATG AGCAGAAAGC TGAGAACGTG
TATAAGGGTA TCACGCCCCT ATATGCCGAA GATATAGCCG ACACCATAAC CTATATCGTC
AATCTGCCAG ATAAAGTTCA AATCACCGAT ATTACTGTTA CCCCGCTCCA CCAATCGGAT
GCAATACACG TGTATAAATT AGCAAATTAG
 
Protein sequence
MNTLISKQME LNRIKGKIAF ISGASSGIGK AVAEKLAQMG VNLILCARRA EVLAELKAKL 
EKEHAVEVIT LAFDVRNYQE VAKNIQSLPE KWRQIDILIN NAGLAIGLQH LYTYAIEDID
QMIDTNIKGF TYIANSVIPL MIATDKVGTI VNVGSVAGEI AYPNGSIYCA TKFAVKALSD
AMRIELMDKK LKVTTVKPGL VETNFSKVRF KGDEQKAENV YKGITPLYAE DIADTITYIV
NLPDKVQITD ITVTPLHQSD AIHVYKLAN