Gene Coch_1173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1173 
Symbol 
ID8367595 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp1383614 
End bp1384606 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content35% 
IMG OID644983599 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_003141287 
Protein GI256820008 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTAT TCAACTTCCA AAAACCAGAT AAAGTTATAA TGATTGAATC ATCTGATTTC 
GAAGGACGAT TTGAGTTTCG CCCTTTGGAG CCAGGGTATG GTTTAACAAT AGGTAACGCA 
TTACGAAGAG TTATGCTTTC TTCGTTAGAA GGTTTTGCAA TCACTTCTGT GAAATTTGAT 
AAAGTAGGAC ACGAATTTTC TACTATATCA GGAGTAAGAG AAGATGTTAC TGAAATTATT 
CTCAATTTGA AACAAATACG TTTTAAACGC CAGATTGAGG ATATAGAAAA CGAAACAGCA 
ACTATTACTG TTTCTGGTAA AAGACAATTG ACTGCCGGTG ATTTTCAAAA AGCTCTTTCA 
GGTTTTCAAG TATTAAATAC TGATTTGGTG ATTTGCAATA TGGATTCTTC AGCTTCTTTT 
ACAATAGAGA TTACTATTGA AAAAGGACGC GGTTATGTTT CGGCTGAGGA AAATGCAAAA 
CCAAATGCGC CGATAGGTGT AATTGCTACT GATGCAATTT TTACCCCTAT TAAAAATGTG 
AAATATTCTA TTGAAAATTA TCGTGTTGAA CAAAAAACAG ACTACGAGAA GTTAGTCTTT 
GAAATTAAAA CCGATGGGTC TATACACCCT AAACAAGCAC TCACAGAAGC TGCAAAAACA 
CTCATTCATC ACTTTATGCT GTTCTCTGAC GAGAGAATTA CTTTAGAGGC TGATGAAATA 
GCACAAACTG ATACTTATGA TGAAGAATCA TTGCATATGC GCCAGTTGCT AAAAACTAAG 
TTGGTGGATA TGGACTTATC CGTTCGTGCA CTCAATTGTT TGAAAGCTGC CGAAGTAGAA 
ACATTAGGTG ATTTGGTATC TTTCAATAAA GCCGATTTGA TGAAGTTTAG AAACTTCGGA 
AAGAAATCAT TAATTGAGCT TGAAGAGTTG GTAGTCAATA AAGGTTTAGT GTTTGGTATG 
GACACCTCGA AGTATAAATT GGATAAAGAT TAA
 
Protein sequence
MALFNFQKPD KVIMIESSDF EGRFEFRPLE PGYGLTIGNA LRRVMLSSLE GFAITSVKFD 
KVGHEFSTIS GVREDVTEII LNLKQIRFKR QIEDIENETA TITVSGKRQL TAGDFQKALS 
GFQVLNTDLV ICNMDSSASF TIEITIEKGR GYVSAEENAK PNAPIGVIAT DAIFTPIKNV 
KYSIENYRVE QKTDYEKLVF EIKTDGSIHP KQALTEAAKT LIHHFMLFSD ERITLEADEI 
AQTDTYDEES LHMRQLLKTK LVDMDLSVRA LNCLKAAEVE TLGDLVSFNK ADLMKFRNFG 
KKSLIELEEL VVNKGLVFGM DTSKYKLDKD