Gene Coch_1147 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1147 
SymbolrplC 
ID8367569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1371305 
End bp1371922 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content42% 
IMG OID644983573 
Product50S ribosomal protein L3 
Protein accessionYP_003141261 
Protein GI256819982 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.30687e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGGGT TAATCGGAAA AAAAGTAGGA ATGACCAGTA TTTTTGATGA GAACGGAAAA 
AATATTCCTT GTACCATCAT CGAAGCAGGT CCTTGCGTAG TTACCCAAGT CAGAACCAAA
GAGGTTGATG GCTATGATGC TCTTCAACTT GGTTTCGATG ACAAAGCAGA AAAACGTGCT
ACCAAAGCAG AGCTTGGTCA CTTCAAAAAA GCAGGTACTT CTGTAAAGAA AAAAGTTGTT
GAATTCCAAG GTTTTGAAGA CAATTACAAA TTAGGTGATA CTATCACCGT AGATTTCTTC
ACCGAAGGAG AGTTTGTGGA TATCACAGGC GTTTCTAAAG GTAAAGGTTT CCAAGGGGTG
GTACGTCGCC ACGGTTTTGG CGGAGTAGGT CAAACTACTC ACGGTCAGCA CAACCGCCTC
AGGGCACCAG GTTCAGTAGG TGCTTCGTCT TACCCTTCTC GCGTATTCAA AGGTATGCGT
ATGGCTGGAC GTATGGGAGC TGAAAAGGTA ACAGTACAAA ACTTGAAAGT ATTGAAAGTG
GTTGCTGAGA AAAATCTTTT AGTCGTAAAA GGTTGTATTC CAGGTCACAA AAATGCTTAC
GTAACTATTC ACAAATAA
 
Protein sequence
MSGLIGKKVG MTSIFDENGK NIPCTIIEAG PCVVTQVRTK EVDGYDALQL GFDDKAEKRA 
TKAELGHFKK AGTSVKKKVV EFQGFEDNYK LGDTITVDFF TEGEFVDITG VSKGKGFQGV
VRRHGFGGVG QTTHGQHNRL RAPGSVGASS YPSRVFKGMR MAGRMGAEKV TVQNLKVLKV
VAEKNLLVVK GCIPGHKNAY VTIHK