Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1028 |
Symbol | |
ID | 8367448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 1215793 |
End bp | 1221267 |
Gene Length | 5475 bp |
Protein Length | 1824 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644983454 |
Product | alpha-2-macroglobulin domain protein |
Protein accession | YP_003141144 |
Protein GI | 256819865 |
COG category | [R] General function prediction only |
COG ID | [COG2373] Large extracellular alpha-helical protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA TAAGCTTTGT ACTGATAGCG TTGTTGGTCG CTATCGCTTG TAAGAAGAAT GTAAATTTCA ACAGCGACCC ACTAGCTTTT AAAGATTATA TTTCAGGGTA TACCTCAGGG CTTATCTCTG CTCACTCAGG AATAAAAATA CTACTGAACG AACCCTTGTC GCAAGACAAA ATGGACAAGG TGAGCGACCT TAACCTCTTT GAAATTTCGC CTAAGGTGAA AGGAAAAGTG GTGTGCGTAA ACCCTACACT TGTAGAGTTT ATGCCTGAAA AACCATTGGC TCAAAACACA GAGTACCGCG TGTCGTTTCA CGTAAAGAAG CTCTATGCAG TACCAAAAAA GGAACTGGAG ATTTTCAACT TTACAGTGAA AACTTTTCAA CAAGCCTTTC GAGTAAGGTC AAACGAGTTA CAGTCGTATA ACCGTGATTA TTATTTTCTT AGTGCTGAAC TCTTGGCTAA TGACCAAATA CCTTACGAAA CCGCTAAAGA GATTTTAAAA GCGACTCTTG ATGGGAAGAA AGTAGGAGTG AAGTTCCAGT CGCAAGGCAC TAATAACAAG TTTGTAATTA TCTTCGACAG CTTGCCTCGT CTCAACAAAG AACAAACTCT CCAAATAAAA TGGGACGTTA AAGACATACC TAAAGAAAAC CTTATACCTT TCTCTTATAC TATTCCGCAA AAGGGGGTAT TCAAGGCACT GAACGCTAAA ACCGACGGTG CCAACCAGGC TTTCAGTGTA AACTTTTCTG ACCCCTTAGA AAAAGAACAA GATTTTACAG GACTCATAAG CCTCAGCGAT ACCAATACTG CACTGAAATA CAGCGTAAAC GGCAACGTAG TGAAAGTCTT CCGCGAGGAA CAAAAAGAGG GTGACTACAA GGTGCACATT TCTAAAGGTA TCAAGAATAT CTATGGCGAC CGATTGGAAA AAGAAGCGAC TTTTGACATC AAATTTTTAC AGCAAAAACC CGATATTCGC TTTCTTAAGA GCGGTACTAT CCTACCGAGC TCACAGAATT TGAAAATCAA CTTTCAAACT ATTAACTTGC GCGCGGTGAA TGTAACGGTA TACCGCATTT TCGAGAACAA TATCTTTCAG TTTTTACAAG ATAACGATTT GGGCGGAGGC TCGTATATAC AGCGTGTAGG CAAGCCTATT GCACGGAAAG TACTCAAACT GAACGACAGT GCGCTCTATC CGCTGAACGA GTGGAATACT TATTCGCTCG ACCTTGCTTC GGTGATTACG CCCGAACCAG GGGCAATTTA CCGAGTAGAA TTAGGAATGA CCAAAAACTA TTCACTCTAC GCTTGTGGTG CTAAAAACGA AGAACCTCTT GACCTTTCGT TTGAACAAAA ACCATTAAAT GACGACGATG TAACCTACTC TCAATACTAT GATTACGACG AAGAATTCTA TTGGGAAGAA GACGAGGATA GTCCTTGTAA AGACAATTAT TACTACGGCA GAACGGTGGG TACCAATGTG CTTGCTTCCG ACCTTGGAGT GATTGTAAAA AAAGGACAAA CGAACAACTT TACCATAGTA GTAAACGACT TGCTCACTAC CAAACCAGTA GTTGGAGCAA TAGTAGAGGT TTTCAGCTAC CAACAGCAGA AAATACAAGA AGGCAAAACC GATAGTAAGG GAATACTACG GTTAAATCTC AGTAGCCGTG CTTACTTTGC CAAAGTGAAA AAAGACAAAT TCACTACTTA TGTGAAGTTA GACGACGGCG CACCACAGTC GGTAAGCAAA TACGATGTAG ATGGTATGCG CTTACAGAAA GGGCTCAACG GTTTTATCTA TACCGAACGC GGCGTATGGC GACCCGGTGA TAGCATTTAT GTGGGCTTTA TATTGAACGA CTTTGCCCAA AAGACCCCTG AAAAACTGCC TATCAAACTG CGCTTTACTG ACCCTTATGG AAAGGTGATA GCCGAGCGTA TGCAGAGTAG CAACCCTACC AACCAGTATG TATTTGGACT GAAAACCAAC TCCGATGCGC CTACGGGCAA CTGGAATGTG AGTATCTCGG CAGGGGCTAC AAAATTCAGC AAACGCATCA AGATTGAAAC CATTAAGCCT AACCGCTTGA AGATAGAGAA CAACCTCAAC GGTAAACTTA TCAGTCAAAA AGGCGACAAT GTGCGCTTGC AAGTGTTGTG GTTACACGGC TCTCCAGCAG GTAATACAGG TGTGAGCGTG AAAGCGAAGT TCTACCCCTT AGAAACTGCC TTCAAAGGTT ATGAAAAATA CGTGTTCAAC AATCGCGCTT ATCAGTTTGA GAGCGAAGAG ATGAACGTAT TTGAAGGGCG TACCGATAGC AACGGGAATG CGAATTTCTA CTTCAGAACG AACGACTTAG ATGCTCCTGG TATGCTAAAA GTGAACTTCC TCACCCAAGC CAACGAAAGT GGTGGCGATT TCAGTACCGA TGTGAGTACC GCCTCTTTTT CACCTTATAG TGAGTATGTA GGTTTACGCT TGCCCGAAAC CAACAAATAC GATTATTACA ACACCCAACA AAACCACACT TTCGATGCAG TAGTACTCAG CGAAGAAGGC AAACCACTCA GCCATAAAGA TGTGTCGGTA ACCGTGTATA AAGTAGGCTG GAACTGGTGG TGGGACGCTT CGAACCAGAA TATCTCTACC TATAATAGCA GTAGTAGCAA TGCTATTTAC ACCACTAAAA ACATCACTAC CGACAGCAGT GGTAAAGCAC GTTTTACACT CAATATTCCG GATGCCGACT GGGGTCGCTA TTTTATTATG CTCACTGATG ACCAAAGCGG TCATAAGTGT GGCACGACTG CTTATTTTGA TTGGGGTGAC TGGACTGGCA AATCGCGTGG CAGTGAAGGT AGTGAAGCGG TAATGCTCGC TTTGGGTACT AACAAAAAAG AATACAGCGT AGGTGAAAAA GCTAAGATTA GTTTCCCGTC AGACAAAGGC GGTCGCGCGC TCATCTCGGT AGAAAACGGG AACGATGTAC TCGAAACTCA CTGGGTAGAG ACCGCTAATA AAGAAACTAC TTTTGAGGTA CCTATCACCA ATAAAATGAC GCCTAATATG TATTTTTACG TTACCCTCTT GCAACCTCAC AACAAAACGC TCAATGATGC GCCTATACGC CTCTATGGGG TGATACCGGT GAAGGTGGTA GACAAGAATA CCGTCCTCAA TCCTATAATC CAAATGCCCG ACCGATTGAT ACCTAACCAA AAGGTACAGA TAAAAGTAAG TGAGAAATCG GGTAAACCGA TGACATACAC TTTGGCTATC GTAGAAGATG GACTCCTAAA CCTCACCCGC TTCAAAACTC CTAACCCTTG GAATACTTTC TTTAGCAAAA CTGCTCTTGG AGTAAAGACT TGGGACGTGT ACGATGATGT AATAGGTGCT TATGGAGGTA CTATCAATCA AGCGTTCAGT ATAGGAGGAG ATGAAGATTT AGGCGGTGCC GATGCACAGA AAGCAAACCG TTTCAAACCG TTTGTGATAT TTAGAGGTCC TTTTGAACTA AAAAAAGGGG CAGCCAATAC TCATACCGTG AAAATTCCTA ACTATATGGG TTCTGCTCGT GTGATGGTAG TAGCCAGCGA TGTAAAGGGC AATGCCTATG GTAGTGCTGA GAAAAAAGAT ATACCTGTGG TGAGTCCGTT ATCAATTTTG GGTTCCTTAC CACGCAAAGC AGTGCCTAAC GAGAAAATCG TGTTGCCGGT AACCGTTTTT GCTATGGAAA AACAAGTGAA GAACGTATCG CTACAAGTAG AGACTAACGG TTTGTTTAAA GTAGTAAGCA CACGCAACCA ACAGTTGCAC TTTGAGAAAA CAGGGGAGCA AATGGCTTAC TTTGAACTTG AAACCACCTC GCAAACGGGT ATTGGTAAGG TGAAAATCAT TGCTACTTCG GGTAAGGAAA AAGCGACTTA TGAGGTGGAA ATGGATGTGT ACAACCCTAA TCCTGTAACA TATGTAGTAC AAAACGCCGT ATTGCAGGGC GGACAGTCGC ATTCTCTCAA TATCAATCTT TTTGGTGAAA AAGCCAAGAC TGTATTAGAA GTATCGAGCT TCCCAGGGGT GAACCTTACC CAGCGTTTGG GTTATCTTAT CGCTTATCCG CACGGTTGTA GCGAGCAACT CACCTCAGGG GCGTTTCCTC AACTTTTCTT AGCTGACTTT GTAACCCTTT CTAAAGAAAA AGCCGATGAG GTGAACCGCA ATGTAAGTGC TACCATTAGC AAATTGTATG AAAACCAACT CTCTAATGGA GGATTTACCT ACTGGAAAGG TGGCAAGTAT GCCGATGATT GGGTAACCTC GTATATAGGT CAGTTTTTTG TAGAAGCCGA GAAGAAAGGT TATGTATTGC CCTCAGGTAG CAAACAGCGT TGGCTCGACT ATCAGAACAA TGAGGCGCGC CAATGGCGTT ACGAGGGTAA ATATCAAAAC GATTTTGCCC AAGCCTATCG CCTCTATACT TTGGCACTCG CCGGAAATCC TAACATAGGC GCTATGAACC GCTTGCGTGA ACTCAGTGAG CTCACTCCTA ACGCTAAACG CACTTTGGCA GCTGCCTACG CTCTTGCCGG ACAAAAGCAA ACCGCTGAAA AGCTCTTCCT AACTACCGCT ATAGACGATG ATGCTGATAG CTATTACGGC TCGGTGTTGC GCAATAAAGC AATGGCAATG GAAACCGCTT TGCTTATCGG TAGGAAAGAA GATGCAGGAC GTTGGGCATT GGAGATTGCC GAAAAGCTCT CGACTAACGA TTGGCTCAGC ACTCAAACTA CAGCCTATTC GCTTTATGCA ATGGCAAAAT ATGTACAGAA GAACAAGAGC GGTAGAAATA TAGTAGCCAG TTATACTTTG GGTGGTAAAA CCGAAAACTT AAAATCTACC GAGCCAATAC TACAGAAGAC GCTTGCAGCC AAAGGCAATG AGACTTTACA AGTGAAGAAC AACGGCAACC AAACCCTCTA TGTACGCCTC ATTACCAGCG GTATATTACC TGTAGGCAAA GAGCTCGCTA TGCAAAACGG ACTTTCGCTG AACACGACTT ACCGCGATAA CAACGGACAC ACGCTTGATG TGACCAATTT GCGCCAAAGC ACTCAGTTTG TAGCTACTAT TGAGATTACA AACCTCACAG GCGAGAGAGT AGACAATGTA GCACTTACCC AAATTATCCC TTCGGGCTGG GAGATTGTAA ACACGCGATT TACGGATTAC GACGAAGGTG ATGGCAACGG TTATATAGAC TACACTGATT TCCGTGATGA CCGTGCGAAT TTCTACTTGT CGCTGAAAGC CAAACAAACG AAGTATATCA AACTCAAGCT GAATGCTTCG TATGCGGGAC ACTATTATCT GCCAGGTACT TATGCTGAGG CAATGTACAG CAACCGCTAC AATACCCGTA CCAATGGTAG ATGGGTGGAG GTAATTAGGA AATGA
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Protein sequence | MKKISFVLIA LLVAIACKKN VNFNSDPLAF KDYISGYTSG LISAHSGIKI LLNEPLSQDK MDKVSDLNLF EISPKVKGKV VCVNPTLVEF MPEKPLAQNT EYRVSFHVKK LYAVPKKELE IFNFTVKTFQ QAFRVRSNEL QSYNRDYYFL SAELLANDQI PYETAKEILK ATLDGKKVGV KFQSQGTNNK FVIIFDSLPR LNKEQTLQIK WDVKDIPKEN LIPFSYTIPQ KGVFKALNAK TDGANQAFSV NFSDPLEKEQ DFTGLISLSD TNTALKYSVN GNVVKVFREE QKEGDYKVHI SKGIKNIYGD RLEKEATFDI KFLQQKPDIR FLKSGTILPS SQNLKINFQT INLRAVNVTV YRIFENNIFQ FLQDNDLGGG SYIQRVGKPI ARKVLKLNDS ALYPLNEWNT YSLDLASVIT PEPGAIYRVE LGMTKNYSLY ACGAKNEEPL DLSFEQKPLN DDDVTYSQYY DYDEEFYWEE DEDSPCKDNY YYGRTVGTNV LASDLGVIVK KGQTNNFTIV VNDLLTTKPV VGAIVEVFSY QQQKIQEGKT DSKGILRLNL SSRAYFAKVK KDKFTTYVKL DDGAPQSVSK YDVDGMRLQK GLNGFIYTER GVWRPGDSIY VGFILNDFAQ KTPEKLPIKL RFTDPYGKVI AERMQSSNPT NQYVFGLKTN SDAPTGNWNV SISAGATKFS KRIKIETIKP NRLKIENNLN GKLISQKGDN VRLQVLWLHG SPAGNTGVSV KAKFYPLETA FKGYEKYVFN NRAYQFESEE MNVFEGRTDS NGNANFYFRT NDLDAPGMLK VNFLTQANES GGDFSTDVST ASFSPYSEYV GLRLPETNKY DYYNTQQNHT FDAVVLSEEG KPLSHKDVSV TVYKVGWNWW WDASNQNIST YNSSSSNAIY TTKNITTDSS GKARFTLNIP DADWGRYFIM LTDDQSGHKC GTTAYFDWGD WTGKSRGSEG SEAVMLALGT NKKEYSVGEK AKISFPSDKG GRALISVENG NDVLETHWVE TANKETTFEV PITNKMTPNM YFYVTLLQPH NKTLNDAPIR LYGVIPVKVV DKNTVLNPII QMPDRLIPNQ KVQIKVSEKS GKPMTYTLAI VEDGLLNLTR FKTPNPWNTF FSKTALGVKT WDVYDDVIGA YGGTINQAFS IGGDEDLGGA DAQKANRFKP FVIFRGPFEL KKGAANTHTV KIPNYMGSAR VMVVASDVKG NAYGSAEKKD IPVVSPLSIL GSLPRKAVPN EKIVLPVTVF AMEKQVKNVS LQVETNGLFK VVSTRNQQLH FEKTGEQMAY FELETTSQTG IGKVKIIATS GKEKATYEVE MDVYNPNPVT YVVQNAVLQG GQSHSLNINL FGEKAKTVLE VSSFPGVNLT QRLGYLIAYP HGCSEQLTSG AFPQLFLADF VTLSKEKADE VNRNVSATIS KLYENQLSNG GFTYWKGGKY ADDWVTSYIG QFFVEAEKKG YVLPSGSKQR WLDYQNNEAR QWRYEGKYQN DFAQAYRLYT LALAGNPNIG AMNRLRELSE LTPNAKRTLA AAYALAGQKQ TAEKLFLTTA IDDDADSYYG SVLRNKAMAM ETALLIGRKE DAGRWALEIA EKLSTNDWLS TQTTAYSLYA MAKYVQKNKS GRNIVASYTL GGKTENLKST EPILQKTLAA KGNETLQVKN NGNQTLYVRL ITSGILPVGK ELAMQNGLSL NTTYRDNNGH TLDVTNLRQS TQFVATIEIT NLTGERVDNV ALTQIIPSGW EIVNTRFTDY DEGDGNGYID YTDFRDDRAN FYLSLKAKQT KYIKLKLNAS YAGHYYLPGT YAEAMYSNRY NTRTNGRWVE VIRK
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