Gene Coch_0944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0944 
Symbol 
ID8367363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1100565 
End bp1101752 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content44% 
IMG OID644983369 
Productthreonine dehydratase 
Protein accessionYP_003141060 
Protein GI256819781 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1171] Threonine dehydratase 
TIGRFAM ID[TIGR01127] threonine dehydratase, medium form
[TIGR01124] threonine ammonia-lyase, biosynthetic, long form 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.463198 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACTTTA CCACAGCACG TGAGCACCTC AAGAGTGTGC TCCTCCCTAC ACACCTTATT 
TATAGTCCGC TCTTCTCAGA AGAATCTGAC AACAAAATCT ACATCAAGCC TGAAAACCTT
CAAAAGACAG GAGCTTTTAA GATTCGTGGC GCTTATAACA AAATCCTTAA ACTCACCGAG
GAAGAGAAAA AAAAAGGAGT TATTGCTTCT TCAGCAGGAA ACCACGCACA AGGCGTTGCC
TACGCAGCAC GTGAATTGGG TATCAAAGCC GTGATTGTAA TGCCTAAAAC TACACCTCTT
ATCAAAGTGC AATCTACTAA AAAGTACGGT GCAGAAGTAG TGCTCTACGG CGATGTATAC
GACGATGCTT ACCAAAAAGC GAAAGAGCTG GAAGAGAAAG AAGGCTACGT GTTTGTACAC
CCTTTCAACG ACCCTGATGT GTTGGAAGGA CAAGGTACTA TCGCCTTAGA GATATTGGAA
GAACTGCCTA ACACCGATGT GATAGTTGTA CCTATAGGCG GTGGTGGACT TATCTCGGGG
ATTGCTTGCG CTGCTAAACA GCTCAAACCC GATATTAAGA TTGTAGGTGT AGAACCCTCA
GGAGCTGCTT CGGCAACCGA AGCGCTCAAG AAAAATAAGC TTGTTAGCCT ACCTGAAGCC
AATACCATTG CTGATGGAAC AGCTGTAAAA CGGATAGGAG AGCTAAATTT TGAGTATATC
AAGAAGTATG TAGACGAGGT GGTAACCGTA GATGACTATG AACTTACGGA AGTTTTCTTG
CTATTGGCAG AAAAGCACAA GCTTATCGCT GAGAACTCAG GCGTATTACC TTTGGCAGCA
CTCAAAAAAC TCACCGACCG CGGTAAGAAC GTTGTGCCTG TAGTAAGTGG GGGCAATATA
GATGTGCTAA TGATATCTTC GATGATAGGC AAGGGATTGG TGAGCAGAGA CCGCATCTTC
AACTTCTCGG TAAGCATTCC TGACCGCCCT GGTGAACTCG CTAAGATTAC TCAAATTATT
GCAGAAGTGG GAGCTAATGT AGTTAAACTC GCCCACAACC AGTTTAAGAA CCTCTCACGT
TTCCGCGATA AAGAAGTGCT TATTACGGTA GAGACCAACG GTACCGACCA TATCCAGCAG
TTGGTAAGAG CTTTTAAAGA TAAAGGGTAC GAAATTACTG CTAAGTAG
 
Protein sequence
MNFTTAREHL KSVLLPTHLI YSPLFSEESD NKIYIKPENL QKTGAFKIRG AYNKILKLTE 
EEKKKGVIAS SAGNHAQGVA YAARELGIKA VIVMPKTTPL IKVQSTKKYG AEVVLYGDVY
DDAYQKAKEL EEKEGYVFVH PFNDPDVLEG QGTIALEILE ELPNTDVIVV PIGGGGLISG
IACAAKQLKP DIKIVGVEPS GAASATEALK KNKLVSLPEA NTIADGTAVK RIGELNFEYI
KKYVDEVVTV DDYELTEVFL LLAEKHKLIA ENSGVLPLAA LKKLTDRGKN VVPVVSGGNI
DVLMISSMIG KGLVSRDRIF NFSVSIPDRP GELAKITQII AEVGANVVKL AHNQFKNLSR
FRDKEVLITV ETNGTDHIQQ LVRAFKDKGY EITAK