Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0842 |
Symbol | |
ID | 8367261 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 1003987 |
End bp | 1006569 |
Gene Length | 2583 bp |
Protein Length | 860 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 644983268 |
Product | DNA mismatch repair protein MutS |
Protein accession | YP_003140959 |
Protein GI | 256819680 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.899937 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAAAAG AAACCCCCTT GATGAAGCAG TACAATCAGA TAAAAAGCAA ATATCCTGAT GCTTTACTGC TGTTTAGGGT AGGCGATTTC TACGAAACCT TCGGTGAAGA TGCCGTAAAA GCCGCTCATA CCCTCGACAT TGTGCTCACC AACCGCAACA ACGGCACCGA GCGCAGTGAA TTGGCGGGTT TTCCTTACCA TTCTATCAAT ACCTATCTCC CCAAGCTCGT AAAAGCAGGC TACCGCGTGG CAATATGCGA CCAGCTGGAA GACCCTAAAC TCGTGAAAGG CATCGTAAAA CGAGGTGTTA CCGAACTTGT TACCCCAGGA GTCGCCCTCA ACGACGATAT ACTGCAAAGC AAGAGCAACA ACTTCTTAGC CTCAGTATGG TTGGGCAAAC AAAGTTGCGG GGCAGCTTTT CTCGATGTTT CTACCGGTGA GTTCTTGGTA GCACAAGGCG AAAAAACCTA TATCGATAAG CTCTTGCAGA ACTTCCGCCC CAGCGAACTG CTTGTTGCTA AACAACAAAA AAAGGAATTT GCTGAGCATT TTGGCGACGA CTTTCACTGT TTCTACTTGG AAGATTGGGT TTTTAAAGAT GATTATGCCC AGCAGGTACT TACCAAACAC TTCCAAACCA ACTCTCTCAA AGGCTTTGGT GTAGACGAAC TCACCGAAGC AATTCTTACT GCAGGGGCTA TTCTCTACTA CTTATCCGAA ACCCAACACC ACCAACTCCA ACACATTACT GCCATTCAGC GCATCGCCGA AGAGGCTTAT GTATGGCTCG ACAAGTTTAC CATTCGCAAT TTGGAACTCT ATGTGGGCAA TACCACCCCC TCGGTGAGTT TGCTCGATGT GATTGATAAA ACGCTATCGC CTATGGGCAG TCGTACCCTC AAACGCTGGT TGGCGTTACC GCTCAAGAAG TTAGACAAAA TCCGTCAGCG TCACGAGGTG GTCGATTACT TTTTGAAACA CATCGATGTA TTAGAGCAGG TGAAAACTGC CCTCAGTCAT ATGGGCGACA TCGAACGACT GATTTCTAAG GTTGCTACCC TTAAAATCAA TCCGCGGGAG GTAGTGCAAT TGCGCGCTTC TTTGGAACAT ATCCCCCTGA TAAAACAGTT GTGTTTGGCT TCTGCCAATG AATCGCTTAC CCTTTTGGGC GATAAACTCC ACAGTTGCGA ACAGCTCAGC GCACGCATCG CCGAAACACT TAGTGAAGAT GCTCCTGTGA ACATAGCCAA AGGTAATGCT ATCGCCAAAG GTTTTTCGGC AGAATTGGAC GAACTACGCG GACTCTCGCA TTCGGGCAAA AGTTATTTAG ACGATTTGCT CTTGCGTGAA AGCCAACGCA CAGGTATTCC TTCTCTGAAA ATAGATAGCA ACAACGTGTT TGGCTACTAT ATCGAAGTGC GCAACACCCA TAAAGATAAA GTCCCGCCCG ATTGGATACG CAAGCAAACT CTTGTGAATG CCGAGCGTTA TATCACCGGA GAACTCAAAG AATACGAAAC CAAAATATTA GGAGCTGAAG AAAAAATCGC TCAGTTAGAG CAATCGCTAT ACGCCGAACT GATTGCTTTT ATCAGTGAAT ATATCGGTCA GGTACAAACG AACGCCACCC TTATCGGTCA GCTGGATTGC CTTTGTAGTT TTGCTACTTT GGCAATGGAA AACAACTATC ACCGCCCCGA GATGAACGAA GGGTATGCCA TTGAAATTAA GGACGGTCGC CACCCTGTGA TTGAGAAGCA ACTACCCGTA GGTACGCCCT ACATTGCCAA CGATGTGTAT TTAGACCGCG AACGCCAGCA AATCATAATG ATTACCGGAC CTAATATGTC GGGTAAATCG GCTATTCTGA GACAAACCGC CCTGATAGTA CTCTTGGCAC AGATAGGTAG TTTTGTACCT GCTGCTACTG CTCAATTAGG TATAGTTGAT AAGATATTCA CCCGTGTAGG CGCAAGCGAT AACATCTCTA TGGGCGAATC TACTTTTATG GTGGAGATGA ACGAGGCAGC CCTTATTTTG AACAACATCT CCGATAGAAG TTTGGTGCTC TTGGACGAAA TCGGGCGTGG TACTAGCACC TACGACGGTA TTTCCATAGC GTGGGCAATC GCCGAATATT TGCACGAGCA CCCTAGCAAA GCCAAAACCC TTTTTGCTAC CCACTATCAC GAACTCAACG AGATGAGTGA GCAGTTCGAG CGCATCAAGA ATTACAATGT ATCGGTAAAA GAAACCAAAG ACAGCGTACT TTTCTTGCGC AAACTCACCG AGGGCGGTTC AGCGCACAGT TTTGGGATAC ACGTAGCGAA GATGGCGGGA ATGCCCCAAT ATGTGATTCA GAAGGCGAAT AAAATGCTTA AAAAGCTCGA AGAGAGTCAT AATGTAGTAC CCACTGCCGA AGTGGTTAAA AACGCCCAAA AAGAAATGCA ATTGAGCTTC TTTGATATGA ACGATCCACT TTTAGAAGCC CTAAAAGAAG ATTTACTCAG TCTCGACATC AACACCCTCA CTCCCGTAGA GGCACTGATG AAACTCAACG AAATGAGAAA ACGAATTAGC TAA
|
Protein sequence | MAKETPLMKQ YNQIKSKYPD ALLLFRVGDF YETFGEDAVK AAHTLDIVLT NRNNGTERSE LAGFPYHSIN TYLPKLVKAG YRVAICDQLE DPKLVKGIVK RGVTELVTPG VALNDDILQS KSNNFLASVW LGKQSCGAAF LDVSTGEFLV AQGEKTYIDK LLQNFRPSEL LVAKQQKKEF AEHFGDDFHC FYLEDWVFKD DYAQQVLTKH FQTNSLKGFG VDELTEAILT AGAILYYLSE TQHHQLQHIT AIQRIAEEAY VWLDKFTIRN LELYVGNTTP SVSLLDVIDK TLSPMGSRTL KRWLALPLKK LDKIRQRHEV VDYFLKHIDV LEQVKTALSH MGDIERLISK VATLKINPRE VVQLRASLEH IPLIKQLCLA SANESLTLLG DKLHSCEQLS ARIAETLSED APVNIAKGNA IAKGFSAELD ELRGLSHSGK SYLDDLLLRE SQRTGIPSLK IDSNNVFGYY IEVRNTHKDK VPPDWIRKQT LVNAERYITG ELKEYETKIL GAEEKIAQLE QSLYAELIAF ISEYIGQVQT NATLIGQLDC LCSFATLAME NNYHRPEMNE GYAIEIKDGR HPVIEKQLPV GTPYIANDVY LDRERQQIIM ITGPNMSGKS AILRQTALIV LLAQIGSFVP AATAQLGIVD KIFTRVGASD NISMGESTFM VEMNEAALIL NNISDRSLVL LDEIGRGTST YDGISIAWAI AEYLHEHPSK AKTLFATHYH ELNEMSEQFE RIKNYNVSVK ETKDSVLFLR KLTEGGSAHS FGIHVAKMAG MPQYVIQKAN KMLKKLEESH NVVPTAEVVK NAQKEMQLSF FDMNDPLLEA LKEDLLSLDI NTLTPVEALM KLNEMRKRIS
|
| |