Gene Coch_0842 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0842 
Symbol 
ID8367261 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp1003987 
End bp1006569 
Gene Length2583 bp 
Protein Length860 aa 
Translation table11 
GC content46% 
IMG OID644983268 
ProductDNA mismatch repair protein MutS 
Protein accessionYP_003140959 
Protein GI256819680 
COG category[L] Replication, recombination and repair 
COG ID[COG0249] Mismatch repair ATPase (MutS family) 
TIGRFAM ID[TIGR01070] DNA mismatch repair protein MutS 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.899937 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAAAG AAACCCCCTT GATGAAGCAG TACAATCAGA TAAAAAGCAA ATATCCTGAT 
GCTTTACTGC TGTTTAGGGT AGGCGATTTC TACGAAACCT TCGGTGAAGA TGCCGTAAAA
GCCGCTCATA CCCTCGACAT TGTGCTCACC AACCGCAACA ACGGCACCGA GCGCAGTGAA
TTGGCGGGTT TTCCTTACCA TTCTATCAAT ACCTATCTCC CCAAGCTCGT AAAAGCAGGC
TACCGCGTGG CAATATGCGA CCAGCTGGAA GACCCTAAAC TCGTGAAAGG CATCGTAAAA
CGAGGTGTTA CCGAACTTGT TACCCCAGGA GTCGCCCTCA ACGACGATAT ACTGCAAAGC
AAGAGCAACA ACTTCTTAGC CTCAGTATGG TTGGGCAAAC AAAGTTGCGG GGCAGCTTTT
CTCGATGTTT CTACCGGTGA GTTCTTGGTA GCACAAGGCG AAAAAACCTA TATCGATAAG
CTCTTGCAGA ACTTCCGCCC CAGCGAACTG CTTGTTGCTA AACAACAAAA AAAGGAATTT
GCTGAGCATT TTGGCGACGA CTTTCACTGT TTCTACTTGG AAGATTGGGT TTTTAAAGAT
GATTATGCCC AGCAGGTACT TACCAAACAC TTCCAAACCA ACTCTCTCAA AGGCTTTGGT
GTAGACGAAC TCACCGAAGC AATTCTTACT GCAGGGGCTA TTCTCTACTA CTTATCCGAA
ACCCAACACC ACCAACTCCA ACACATTACT GCCATTCAGC GCATCGCCGA AGAGGCTTAT
GTATGGCTCG ACAAGTTTAC CATTCGCAAT TTGGAACTCT ATGTGGGCAA TACCACCCCC
TCGGTGAGTT TGCTCGATGT GATTGATAAA ACGCTATCGC CTATGGGCAG TCGTACCCTC
AAACGCTGGT TGGCGTTACC GCTCAAGAAG TTAGACAAAA TCCGTCAGCG TCACGAGGTG
GTCGATTACT TTTTGAAACA CATCGATGTA TTAGAGCAGG TGAAAACTGC CCTCAGTCAT
ATGGGCGACA TCGAACGACT GATTTCTAAG GTTGCTACCC TTAAAATCAA TCCGCGGGAG
GTAGTGCAAT TGCGCGCTTC TTTGGAACAT ATCCCCCTGA TAAAACAGTT GTGTTTGGCT
TCTGCCAATG AATCGCTTAC CCTTTTGGGC GATAAACTCC ACAGTTGCGA ACAGCTCAGC
GCACGCATCG CCGAAACACT TAGTGAAGAT GCTCCTGTGA ACATAGCCAA AGGTAATGCT
ATCGCCAAAG GTTTTTCGGC AGAATTGGAC GAACTACGCG GACTCTCGCA TTCGGGCAAA
AGTTATTTAG ACGATTTGCT CTTGCGTGAA AGCCAACGCA CAGGTATTCC TTCTCTGAAA
ATAGATAGCA ACAACGTGTT TGGCTACTAT ATCGAAGTGC GCAACACCCA TAAAGATAAA
GTCCCGCCCG ATTGGATACG CAAGCAAACT CTTGTGAATG CCGAGCGTTA TATCACCGGA
GAACTCAAAG AATACGAAAC CAAAATATTA GGAGCTGAAG AAAAAATCGC TCAGTTAGAG
CAATCGCTAT ACGCCGAACT GATTGCTTTT ATCAGTGAAT ATATCGGTCA GGTACAAACG
AACGCCACCC TTATCGGTCA GCTGGATTGC CTTTGTAGTT TTGCTACTTT GGCAATGGAA
AACAACTATC ACCGCCCCGA GATGAACGAA GGGTATGCCA TTGAAATTAA GGACGGTCGC
CACCCTGTGA TTGAGAAGCA ACTACCCGTA GGTACGCCCT ACATTGCCAA CGATGTGTAT
TTAGACCGCG AACGCCAGCA AATCATAATG ATTACCGGAC CTAATATGTC GGGTAAATCG
GCTATTCTGA GACAAACCGC CCTGATAGTA CTCTTGGCAC AGATAGGTAG TTTTGTACCT
GCTGCTACTG CTCAATTAGG TATAGTTGAT AAGATATTCA CCCGTGTAGG CGCAAGCGAT
AACATCTCTA TGGGCGAATC TACTTTTATG GTGGAGATGA ACGAGGCAGC CCTTATTTTG
AACAACATCT CCGATAGAAG TTTGGTGCTC TTGGACGAAA TCGGGCGTGG TACTAGCACC
TACGACGGTA TTTCCATAGC GTGGGCAATC GCCGAATATT TGCACGAGCA CCCTAGCAAA
GCCAAAACCC TTTTTGCTAC CCACTATCAC GAACTCAACG AGATGAGTGA GCAGTTCGAG
CGCATCAAGA ATTACAATGT ATCGGTAAAA GAAACCAAAG ACAGCGTACT TTTCTTGCGC
AAACTCACCG AGGGCGGTTC AGCGCACAGT TTTGGGATAC ACGTAGCGAA GATGGCGGGA
ATGCCCCAAT ATGTGATTCA GAAGGCGAAT AAAATGCTTA AAAAGCTCGA AGAGAGTCAT
AATGTAGTAC CCACTGCCGA AGTGGTTAAA AACGCCCAAA AAGAAATGCA ATTGAGCTTC
TTTGATATGA ACGATCCACT TTTAGAAGCC CTAAAAGAAG ATTTACTCAG TCTCGACATC
AACACCCTCA CTCCCGTAGA GGCACTGATG AAACTCAACG AAATGAGAAA ACGAATTAGC
TAA
 
Protein sequence
MAKETPLMKQ YNQIKSKYPD ALLLFRVGDF YETFGEDAVK AAHTLDIVLT NRNNGTERSE 
LAGFPYHSIN TYLPKLVKAG YRVAICDQLE DPKLVKGIVK RGVTELVTPG VALNDDILQS
KSNNFLASVW LGKQSCGAAF LDVSTGEFLV AQGEKTYIDK LLQNFRPSEL LVAKQQKKEF
AEHFGDDFHC FYLEDWVFKD DYAQQVLTKH FQTNSLKGFG VDELTEAILT AGAILYYLSE
TQHHQLQHIT AIQRIAEEAY VWLDKFTIRN LELYVGNTTP SVSLLDVIDK TLSPMGSRTL
KRWLALPLKK LDKIRQRHEV VDYFLKHIDV LEQVKTALSH MGDIERLISK VATLKINPRE
VVQLRASLEH IPLIKQLCLA SANESLTLLG DKLHSCEQLS ARIAETLSED APVNIAKGNA
IAKGFSAELD ELRGLSHSGK SYLDDLLLRE SQRTGIPSLK IDSNNVFGYY IEVRNTHKDK
VPPDWIRKQT LVNAERYITG ELKEYETKIL GAEEKIAQLE QSLYAELIAF ISEYIGQVQT
NATLIGQLDC LCSFATLAME NNYHRPEMNE GYAIEIKDGR HPVIEKQLPV GTPYIANDVY
LDRERQQIIM ITGPNMSGKS AILRQTALIV LLAQIGSFVP AATAQLGIVD KIFTRVGASD
NISMGESTFM VEMNEAALIL NNISDRSLVL LDEIGRGTST YDGISIAWAI AEYLHEHPSK
AKTLFATHYH ELNEMSEQFE RIKNYNVSVK ETKDSVLFLR KLTEGGSAHS FGIHVAKMAG
MPQYVIQKAN KMLKKLEESH NVVPTAEVVK NAQKEMQLSF FDMNDPLLEA LKEDLLSLDI
NTLTPVEALM KLNEMRKRIS