Gene Coch_0709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0709 
Symbol 
ID8367126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp864610 
End bp865680 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content44% 
IMG OID644983136 
ProductCDP-glucose 4,6-dehydratase 
Protein accessionYP_003140828 
Protein GI256819549 
COG category[G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0451] Nucleoside-diphosphate-sugar epimerases 
TIGRFAM ID[TIGR02622] CDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAATAG GAAAAGTAAA TCCACAATTT TGGAAAGGCA AACGCGTATT TGTTACAGGG 
CACACGGGCT TCAAAGGTTC GTGGCTATCC CTATGGCTAC AGCTGATGGG TGCTGAGGTA 
AAAGGATTTT CTTTAACTCC TCCTACCCAA CCCGCACTCT TTGATGTAGC TAAAGTAGGC 
GATAATATGC AAACTGAAAT AGGCGACATT CGCAACCTGC AACAGCTATC GCAAAGCATT 
CGTGCTTTCA ACCCCGATGT GTTGTTACAC TTAGCAGCCC AACCTTTAGT GCGACTTTCC 
TACAAAGAAC CTGTAGATAC GTATAGTACC AATGTAATGG GCACTGTAAA CGTTTTAGAA 
GTAGCTCGCC ATACTCCTAA CCTAAAATCA GTGGTAGTCA TCACAACCGA TAAGTGTTAT 
GAGAACCACG AATGGGAATG GGGCTACCGC GAAAATGAAC CTATGGGAGG ATACGACCCT 
TATAGCAATA GCAAAGGATG TGCTGAGTTA GTAGTGTCTG CTTATCGCCG TTCGTTTTTT 
TATACTGACG ATACCGCAGC CATAGCTTCA GCCCGTGCAG GTAATGTAAT AGGAGGTGGC 
GATTGGGCTG AAGATAGATT AATACCCGAT ATCTTGCGCG CTTTCGAAAA ACAACAACCT 
GTAATCATCC GCAACCCACT ATCCACCCGT CCGTGGCAAC ACGTTTTGGA ACCCCTTTCA 
GGCTATTTAG TATTAGCTGA ACGATTATAT AATGAGGGCA ATGTCTTTGC CGAAGGTTGG 
AATTTTGGAC CTAAGGACGA CGATTGCCAA TCAGTACAAT GGATATTAGA GAAAATGGTA 
CAATTTTGGG GTGAAGGAGC TCGTTATGAA TGGGACAAAA GCGAACAGCC TCACGAAGCT 
AATTTCTTGA AACTTGACTG TTCCAAAGCT GCCACCCGAC TCAAATGGCA TCCTCAATGG 
CGACTCGCCG ATACTTTAGA GAAAATCATC CACTGGCATC GCTCTTGGTT ACAAGGAGCA 
GATATGCAAA CCCGATGCTT ATATGAAATC AAAGGCTATA TGGAATCCTA A
 
Protein sequence
MAIGKVNPQF WKGKRVFVTG HTGFKGSWLS LWLQLMGAEV KGFSLTPPTQ PALFDVAKVG 
DNMQTEIGDI RNLQQLSQSI RAFNPDVLLH LAAQPLVRLS YKEPVDTYST NVMGTVNVLE 
VARHTPNLKS VVVITTDKCY ENHEWEWGYR ENEPMGGYDP YSNSKGCAEL VVSAYRRSFF 
YTDDTAAIAS ARAGNVIGGG DWAEDRLIPD ILRAFEKQQP VIIRNPLSTR PWQHVLEPLS 
GYLVLAERLY NEGNVFAEGW NFGPKDDDCQ SVQWILEKMV QFWGEGARYE WDKSEQPHEA 
NFLKLDCSKA ATRLKWHPQW RLADTLEKII HWHRSWLQGA DMQTRCLYEI KGYMES