| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0661 |
|---|
| Symbol | |
|---|
| ID | 8367078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 813162 |
|---|
| End bp | 814130 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644983088 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003140780 |
|---|
| Protein GI | 256819501 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2461] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAA CTTTACCCGC AGGACACCCC GTGCATACCT ATATGCTTGA AGCTGAACTT
ATTTACTCAC TTATGGACGA GTTGCTCAGC ATAGACCCTC ATACCGATTA TCAGAAATTC
TACAACGTGT TTAATCATTT GGCAACGGTA GAAAAACACT TTGCTCGCAA AGAAAACCAG
CTTTTCCCTT TCTTGGAAAA ACGCGGTTGG ACGAATCCTT CACAGAATAT GTGGTCTTTC
CACGATACCA TTCGCGATAT CTTCCGTTTG GTACGCAAAA ACTTAGAAGA AAAAGACCTT
GATGCGGCGC AAACCAATGT GCGCTATATC GAAGATAACT TAGGTCGTTT GCTAAATGTA
GAAGCGAATA TCCTGTTCCC TAACGCCTTG CAATTACTCA CCGAAGAAGA TTGGATTGAA
ATGCGCAAAG GCGAAGAGGA AATAGGTTGG ATGCTGAAAG AAGAACCTGC ACCTTACCCT
AACAACAACC CCAATGAGCC TGTGTACGTA CACCCTTCAA TGGATACCGA ACGCCGCACC
GATGTTAAAT TCGCCGATGA TGCTGCTCAT TACGATGAGG GCTATATGAC TGTTGAACAG
GTAAACCTCT TGCTCAAAAC CCTTCCTATT GATATCACTT TTGTAGATGA ACACGACCGC
GTGATTTTCT ACAATCGTGG CGAAGAACGC GTATTCCCTC GCAGTGCCGG TATTATAGGG
CGCGAAGTGA AGTTCTGTCA CCCTCCTAAG AGCGTGGGCA CGGTACTTAA AATCGTAGAG
AACTTCAAGG CAGGTACTCA AAACGAAGCT AATTTCTGGT TCAATTATCG CGGTCGCCTT
ATCTATGTGC GTTATTTTGC TGTACGCGAT AAAGAAAAGA ACTATAAAGG CGTGATTGAA
ATGTCGCAAG ATATTACCGA TATTCAAAAA ATAGAAGGCG AACGCCGTTT ATTGGAGTGG
GATAACTAA
|
|---|
| Protein sequence | MEQTLPAGHP VHTYMLEAEL IYSLMDELLS IDPHTDYQKF YNVFNHLATV EKHFARKENQ
LFPFLEKRGW TNPSQNMWSF HDTIRDIFRL VRKNLEEKDL DAAQTNVRYI EDNLGRLLNV
EANILFPNAL QLLTEEDWIE MRKGEEEIGW MLKEEPAPYP NNNPNEPVYV HPSMDTERRT
DVKFADDAAH YDEGYMTVEQ VNLLLKTLPI DITFVDEHDR VIFYNRGEER VFPRSAGIIG
REVKFCHPPK SVGTVLKIVE NFKAGTQNEA NFWFNYRGRL IYVRYFAVRD KEKNYKGVIE
MSQDITDIQK IEGERRLLEW DN
|
|---|
| |