| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0553 |
|---|
| Symbol | |
|---|
| ID | 8366965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 693279 |
|---|
| End bp | 694337 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644982975 |
|---|
| Product | pseudouridine synthase, RluA family |
|---|
| Protein accession | YP_003140672 |
|---|
| Protein GI | 256819393 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0557173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGATA TAGACGAGAT AGAAGATTTA GACGATTTAG AACCAGACGG AGAGGGATCT
CCTTCTCTTT ACGAGCATTA CTCCTTTACG GCGGGCAAAG GGCAAGAACC TTTGCGCGTG
GATAAATTCT TGATGAACTT TGTAGAGAAC GCCACCCGTA ACAAGGTGCA ACAAGCAGCC
AAGCAGGGTA ATATTTTTGT GAATGGCGAG CCTGTAAAGT CTAATCATCG TGTGAAAGCT
AATGACGAAG TAAAGGTACT TTTTCCTCAC CCTCCTCACG AGGATTTATT GGTGCCCGAG
AATATTCCTT TAAACATAGT ATACGAAGAC GATAGCCTTT TGGTGGTAAA CAAACCTGCG
GGTATGGTGG TACACCCTGG TCACGGCAAC TACAGCGGAA CGCTCATCAA CGCATTGGTA
TATCATTTTG AGAACTTGCC TAACAACAGT AGCAATCGTC CTGGGTTGGT ACATCGTATC
GATAAGGATA CTAGTGGACT TTTAGTAGTG GCTAAAACCG AAGAGGCGAT GTTACACCTT
ACTCAACAGT TTTTTAATAA AACTACTCAG CGCGAATATA TAGCCCTTGT ATGGGGTAAT
ATAGAAGAAG ACGAAGGAAC GGTGTGCGGT CATATTGGGC GACACTTAAA AGACCGCCTG
CAAATGGACG TCTTCCCCGA TGGTTCTCAC GGTAAAGAGG CAGTAACCCA TTACAAGGTG
TTAGAGCGTT TTGGTTATGT AACACTCATT TCTTGCAAGT TAGAAACAGG GCGTACACAC
CAGATAAGAG TACATTTAAA GCACATAGGG CATACCCTTT TCAACGATGA ACGTTATGGG
GGCGACAAGA TTCTGAAAGG AACGACTTTT GCCAAATACA AGCAGTTTGT AGAGAATTGC
TTTGCGGTAT TACCTCGCCA AGCCTTGCAC GCTAAAACCT TAGGTTTTGA ACACCCGATT
ACTCACAAGT ACCTTAGCTT TGATAGCGAA CTTCCTAATG ATATGCAACA ATGTATAGAG
AAATGGAGGA ATTATAAGAA GTCGATGGTA AGTGATTAA
|
|---|
| Protein sequence | MRDIDEIEDL DDLEPDGEGS PSLYEHYSFT AGKGQEPLRV DKFLMNFVEN ATRNKVQQAA
KQGNIFVNGE PVKSNHRVKA NDEVKVLFPH PPHEDLLVPE NIPLNIVYED DSLLVVNKPA
GMVVHPGHGN YSGTLINALV YHFENLPNNS SNRPGLVHRI DKDTSGLLVV AKTEEAMLHL
TQQFFNKTTQ REYIALVWGN IEEDEGTVCG HIGRHLKDRL QMDVFPDGSH GKEAVTHYKV
LERFGYVTLI SCKLETGRTH QIRVHLKHIG HTLFNDERYG GDKILKGTTF AKYKQFVENC
FAVLPRQALH AKTLGFEHPI THKYLSFDSE LPNDMQQCIE KWRNYKKSMV SD
|
|---|
| |