| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0479 |
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| Symbol | |
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| ID | 8366890 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 616313 |
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| End bp | 617296 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 644982905 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_003140603 |
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| Protein GI | 256819324 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0020045 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGCCTAAAA TAGGAAACAT AGATTTAGGA GATTTCCCTT TATTGCTTGC ACCTATGGAA
GATGTAAGCG ATCCTCCCTT TCGTCGCCTC TGCAAAATGC ACGGAGCTGA TATGCTTTAC
AGTGAGTTTA TCTCTTCCGA AGGACTCATA CGCGACGCCA TTAAAAGCCG TCAAAAGTTA
GATATTTTCG ATTACGAACG TCCCGTAGGC ATACAAATTT TTGGAGGTGA TGAAGAAGCA
ATGGCGCTCT CAGCTAAAAT CGTTGCCACT GTAAACCCCG ATTTAGTAGA CATCAACTTT
GGTTGTCCTG TAAAGAAGGT TGTAAGCAAA GGTGCAGGAG CGGGGGTATT GAAAGATATC
GATTTGATGG TGCGCCTTAC CAAAGCAGTC GTAAACAGTA CCCATTTACC TGTAACCGTA
AAAACGCGTT TAGGCTGGGA CGAGCAAAGT ATCAATATAG AAGAAGTAGC CGAACGTCTG
CAAGATGTAG GTATCAGCGC GCTTACCATT CACGCCCGTA CCCGTAGCCA GATGTACAAA
GGTCACTCCG ATTGGAGCTA CATTGCCAAA GTGAAGAACA ATCCTCGTAT CCATATTCCT
ATTTTTGGTA ACGGCGATAT CGATAGTCCT GAAAAAGCCT TAGAATACCG CAATACTTAC
GGTGTTGACG GTATAATGAT AGGTCGTGCA GCCATTGGTT ATCCGTGGAT ATTTAATGAA
ATAAAGCATT ATTTTGCAAC GGGAAAGCTT CTCCCCTCCC CTACTATATC CGATCGTGTA
GAAGCTGCTA AAAACCATCT ATTATGGTCG GTAGAATGGA AAGGTGAACG ACAAGGAGTG
TTGGAAATGC GCAGGCATTA TGCTAATTAT TTTAAGGGGA TTCCTAATTT TAAAGAACAT
CGCCAGCGAT TAGTAACGTT AGATTCCTCA GAAGAAATAA TAAGAGAACT CGAAGTAGTG
AGAGAATTAA AAAGGGAAGT CTAA
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| Protein sequence | MPKIGNIDLG DFPLLLAPME DVSDPPFRRL CKMHGADMLY SEFISSEGLI RDAIKSRQKL
DIFDYERPVG IQIFGGDEEA MALSAKIVAT VNPDLVDINF GCPVKKVVSK GAGAGVLKDI
DLMVRLTKAV VNSTHLPVTV KTRLGWDEQS INIEEVAERL QDVGISALTI HARTRSQMYK
GHSDWSYIAK VKNNPRIHIP IFGNGDIDSP EKALEYRNTY GVDGIMIGRA AIGYPWIFNE
IKHYFATGKL LPSPTISDRV EAAKNHLLWS VEWKGERQGV LEMRRHYANY FKGIPNFKEH
RQRLVTLDSS EEIIRELEVV RELKREV
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