| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0467 |
|---|
| Symbol | |
|---|
| ID | 8366873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 597641 |
|---|
| End bp | 599395 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644982888 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003140591 |
|---|
| Protein GI | 256819312 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTAT TTGAACAATT AGGTCTTAAT GAACCTATCC TCAAAGCCAT CAGCGATATG
GGCTTTGAAA CTCCTTCTGA AATTCAGCAA AAAGCCATCC CTACTCTTTT AGCAAATGGT
GCTGATATGG TAGCTTTAGC CCAAACGGGT ACTGGTAAAA CAGCCGCTTT TGGCTTTCCT
CTCCTCCAAC TTATCGATAC TGATAGCCGT GTAACTCAAG GTCTTATCCT TTCACCTACA
CGCGAACTCT GCTTGCAAAT CGCTTCTGAA CTCCGCAATT ATGCTAAGTA CCTCCCTAAG
GTGAACGTAG TGGCGGTATA TGGCGGTGCA AGTATCGAGG AACAAGCGCG TAGCCTCAAA
AAAGGCGCAC AAATTATCGT GGCTACTCCT GGGCGTATGC AAGATATGAT ACGCCGTAAC
TTCGTAGATA TCAGCCATAT CAACTATTGT GTGCTCGACG AAGCCGACGA AATGCTCAAT
ATGGGCTTCT ATGAAGATAT TACCGCAATT CTATCGCATA CCCCTCAAGA AAAAAGCACT
TGGCTCTTTT CGGCTACTAT GCCTAACGAG GTGGCTAAGA TAGCGCGTAA GTTTATGCGT
AAGCCTATTG AAATAACAGT AGGAACTCGC AATCAGGCTA CTAACACCGT GCAACACGAG
TACTATATAG TGAGCGGTCG CCATAGATAC CAAGCCCTAA AACGCCTCGC CGATGCCAAC
CCCGATATCT TCTCAGTAGT GTTTTGCCGC ACCAAACGCG ATACTCAGGC AGTAGCCGAA
AAACTCATTG AAGACGGTTA CAATGCCGCT GCCCTTCACG GCGATTTGAG TCAGAATCAG
CGCGATTTGG TGATGAAATC CTTCCGCGCA CGCCAAATAC AAATGCTTGT CGCTACCGAT
GTCGCTGCCC GCGGTATTGA TGTAGACGAT ATCACCCACG TAATTCACTA CCAATTGCCC
GACGAAATAG AAACCTACAA CCACCGCAGT GGGCGTACAG GTCGTGCTGG TAAATCGGGA
ATTTCGATGG TAATTTTGCC AAAAAGCGAG GTAAAGAAAA TCAAAACTAT CGAAAAGATG
ATAGGGCAAC CTTTTGAGCA AAAACAATTG CCATCGGGTA TGGAAATCTG CGAGATACAG
CTCTATCACT TGGCTAACAA CCTCAAAAAT ACAGAAGTAA ACCCTGCTAT CGACGATTAT
TTGCCTGCTA TCTATAAAGA ACTGAAAAAT GTAGATCGCG ATGAGTTGAT CAAAAAAATA
TTCTCAGTAG AGTTTACGCG TTTCTTCAAT TATTATAAAA ATGCCGAAAA CTTATCGGTA
GAGAACGAGC GTGAAAGCCG CAGTAGGGGT AATAGCGATG AAGTGCGCTA TTTCATCAAC
ATAGGTGAAC GCGATGGCTA CGACTGGAAA TCGCTCAAAG ATTTCCTCAA AGCAACCCTT
AATTTAGGTC GTGATGATGT TTTCAAAGTA GATGTAAAGA ACAGTTTCTC TTTCTTCAAT
ACCGATGCCG ACCTCTCCGA TTTGGTGATG GATACCTTTA ACGACTTCCA ATTGGACGGT
CGCTTCATCA ATGTAGAACT CTCTACCAAA GGTGCTGGCA GAGACCGTGG CGGAAGCAAA
CGCGGAAATG ATGACGGTAG GAAACACGGC AACGATGAGG GTAGAAATCG CAAAAAAGGA
CAAAGAGAAA GTCGCAAACA AAAGACTGCT GAAGCTCTCC AACAGGCTTT TAAAAAGAAG
AAAAAACGTA AATAA
|
|---|
| Protein sequence | MNLFEQLGLN EPILKAISDM GFETPSEIQQ KAIPTLLANG ADMVALAQTG TGKTAAFGFP
LLQLIDTDSR VTQGLILSPT RELCLQIASE LRNYAKYLPK VNVVAVYGGA SIEEQARSLK
KGAQIIVATP GRMQDMIRRN FVDISHINYC VLDEADEMLN MGFYEDITAI LSHTPQEKST
WLFSATMPNE VAKIARKFMR KPIEITVGTR NQATNTVQHE YYIVSGRHRY QALKRLADAN
PDIFSVVFCR TKRDTQAVAE KLIEDGYNAA ALHGDLSQNQ RDLVMKSFRA RQIQMLVATD
VAARGIDVDD ITHVIHYQLP DEIETYNHRS GRTGRAGKSG ISMVILPKSE VKKIKTIEKM
IGQPFEQKQL PSGMEICEIQ LYHLANNLKN TEVNPAIDDY LPAIYKELKN VDRDELIKKI
FSVEFTRFFN YYKNAENLSV ENERESRSRG NSDEVRYFIN IGERDGYDWK SLKDFLKATL
NLGRDDVFKV DVKNSFSFFN TDADLSDLVM DTFNDFQLDG RFINVELSTK GAGRDRGGSK
RGNDDGRKHG NDEGRNRKKG QRESRKQKTA EALQQAFKKK KKRK
|
|---|
| |