| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0426 |
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| Symbol | rpoB |
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| ID | 8366832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 535179 |
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| End bp | 538988 |
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| Gene Length | 3810 bp |
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| Protein Length | 1269 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644982847 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_003140550 |
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| Protein GI | 256819271 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.277885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTACGA ATCAAACCGC AAGAGTGAAT TTTGCTTCCG TGAAACACGT TCCTGAATAC
CCTGACTTCT TGGATATTCA AATCAAATCG TTTCAAGAGT TCTTTCAGAT GGAGACCAAA
TCGGAAGACC GAGTGCACGA GGGATTGTAT CATACCTTTA AAGAGAACTT TCCTATATCG
GACACTCGCA ACCAATTCGT ATTGGAGTTT CTCGACTATT TCGTAGACCC TCCTCGCTAC
ACTATCCAAG AATGTATAGA ACGCGGTCTT ACTTATAGTG TGCCTCTGAA AGCCCGATTA
AAGCTTTATT GTACTGACCC CGAGCACGAA GATTTTGAAA CTATCGTACA AGACGTTTAT
TTGGGCACAA TCCCTTATAT GACAGCAAGC GGAACATTCG TTATCAACGG AGCTGAGCGT
GTAGTAGTAT CGCAGTTACA CCGTTCACCA GGGGTATTCT TCGGTCAGTC GTTTCACGCT
AATGGTACTA AACTCTACTC TGCACGTATT ATTCCTTTCA AAGGTTCGTG GATTGAGTTT
GCTACCGATA TCAACAACGT GATGTATGCC TATATCGACC GTAAGAAAAA ACTCCCTGTT
ACAACACTCT TCCGTGCGAT TGGGTTTGAA CGTGATAAAG ATATATTGGA AATATTCGAC
CTTGCAGAAG AAATAAAGGT TTCTAAAACA GGACTTAAAA AATACATCGG TCGTCGTTTG
GCTGCCCGTG TGCTCAACAC TTGGCACGAA GACTTCGTAG ACGAAGATAC CGGAGAGGTA
GTATCTATCG AGCGTAATGA GATTATCCTC GACCGCGATA CTGTACTCGA CGAAGATAAC
ATTCAAGAAA TCTTAGAAGC TGATGTAAAG ACCATTCTTC TTCACAAAGA AGATAGTCAG
GCTACCGACT ATACCATTAT CCACAATACT TTACAAAAAG ACCCTACCAA CTCTGAGAAG
GAAGCAGTGG AACACATTTA CCGACAGTTG CGTAATGCTG AACCGCCCGA TGAGGAAACT
GCTCGCGGTA TTATCGACAA GTTGTTCTTC TCAGACCAAC GTTACAATTT GGGAGACGTA
GGGCGTTACC GTATCAACAA AAAATTGGGA TTGGATACCC CTATGGAAAA GCAAGTGCTT
ACCAAAGAGG ATATCATTAC CATTGTAAAA TATTTGATTG AGCTCATCAA CTCTAAAGCA
GAGGTAGATG ATATCGACCA CTTGTCTAAC CGCCGTGTGC GCACAGTAGG AGAGCAATTG
GCAGCTCAGT TTGGCGTAGG TCTTTCTCGT ATGTCGCGCA CTATCCGTGA ACGTATGAAC
GTACGTGACA ACGAGGTATT TACTCCTATC GATTTGATCA ATGCGAAGAC CCTTTCTTCT
GTAATTAACT CGTTCTTTGG TACAAACCAA TTATCTCAGT TTATGGATCA AACGAATCCT
TTGGCTGAGA TTACTCACAA ACGCCGTTTG TCCGCCTTAG GGCCTGGAGG TTTGTCGCGT
GAGCGTGCGG GCTTTGAGGT GCGAGACGTA CACTATACTC ACTACGGACG TTTGTGCCCT
ATTGAAACCC CAGAAGGGCC GAATATCGGT TTGATATCTT CGTTGGCGGT ATTCTCGAAG
GTAAACGGTA TGGGCTTTAT AGAAACCCCT TATCACAAAG TTACTAATGG GAAGGTAGAT
CTTAAAGATA TGACCTACCT CACTGCCGAA GACGAAGAAG GACTCAAAAT TGGTATGGCT
AATATCGCAT TAGACGATAA AGCTAATATC ACTGAAGAAA AAGTGGTTGT AAAAGAAGAT
GGTGACTTCC CTGTAATTGA ACCTAACGAA GTACAATATA TAGACGTTGC TCCTAACCAA
ATCGCTTCTA TTTCGGCTTC CCTTATTCCG TTCTTGGAAC ACGACGACGC GAACCGTGCG
TTAATGGGCT CGAATATGAT GCGTCAGGCA GTACCTTTGT TAAGACCTGA AGCGCCTATC
GTAGGAACAG GTTTGGAACG CCGTGTAGCT TCAGATGCCC GTGTGCTTAT GAACGCAGAG
GGTGATGGTA CTGTTGATTA TGTAGATGCT GATAAAATCA TTATCACTTA TGACCGTACT
GATGAACAAA AATTGGTAAG CTTTGATGCT GATGAAACAG TATATAACCT TATCAAATTC
CAAAAAACAA ACCAAGGCAC TTGTATCAAC TTAAAACCGA TAGTTGAAAA AGGTGAGAGA
GTGAAAAAAG GTCAGGTGTT GTGTGAAGGT TATGCTACTG AAAACGGAGA GTTAGCACTC
GGTCGTAATA TGAAGGTAGC GTTTATGCCT TGGAAAGGTT ATAACTTTGA GGACGCGATT
GTGATTTCGG AACGCGCTGT ACGCGAGGAT TTATTCACTT CTATCCACAT TGATGAATAC
GCTTTGGAAG TACGTGATAC TAAATTGGGA GCTGAAGAGC TTACTAATGA TATCCCGAAC
GTATCGGAAG ATGCGACCAA AGATTTGGAC GAATACGGTA TGATTCGCAT TGGAGCAGAA
GTACGCCCAG GTGATATTCT TATCGGTAAG ATTACTCCTA AAGGAGAATC AGACCCTACC
CCTGAAGAGA AACTCCTCCG TGCTATCTTT GGTGATAAAG CAGGTGATGT GAAAGACGCT
TCTCTAAAAG CTTCACCTTC ACTTTACGGG GTGGTTATCG ACAAGAAATT GTTTTCACGT
GCAGTAAAAG ACAAACGCAA ACGCAGTAAA GATAAAGAAG ATGTAGCACA ATTAGAAGCT
AATTACAACG CTAAGTTTGA AACTCTTCGC TCTAAATTAT TGGAAAAACT ATATAGTTTG
GTGGCTGAAA AGACTTCGGA AGGAGTAGTA AACGACCTCG GTGAAGAAAT TGTGCCTAAA
GGTAAGAAAT ATACTAAGAA AGTGCTTGAA GGTATTGAGG ATTATGCTCA CCTTACTTCT
GCAGGTTGGA CTGACGATAA GCACATCAAC GGTCTTATAG ATGACCTTTT GCACAACTAT
CGCATTCGTG AAAATGACCT ACAAGGAGGA TTACGTCGCG ATAAATTTAC CATTGCTGTG
GGTGACGAAT TACCTGCAGG TATTCTAAAA TTAGCTAAAA TTTACGTGGC TAAGAAACGT
AAGCTAAAAG TAGGGGATAA GATGGCAGGT CGACACGGTA ACAAGGGTAT CGTAGCACGT
ATCGTTCGCG ATGAGGATAT GCCATTCCTT GAAGACGGAA CTCCGGTAGA CATCGTGTTG
AACCCTCTTG GGGTACCTTC ACGTATGAAC ATCGGTCAGA TATACGAAAC TGTATTGGGT
TGGGCAGGAC AAAAGCTCGG CAAGAAGTTT GCAACTCCTA TCTTCGATGG AGCATCGCTT
GAGCAAATTA ATGAGCTTAC CGATGAAGCA GGCGTACCGC GTTTCGGTCA TACTTATCTA
TACGATGGTG GTACCGGTGA ACGTTTTGAC CAAAAAGCCA CTGTAGGGGT GATTTATATG
ATCAAACTCG GACATATGAT TGACGATAAG ATGCACGCTC GTTCTATCGG TCCGTACTCA
CTTATCACCC AACAGCCATT GGGAGGTAAA GCCCAATTTG GTGGACAGCG TTTTGGAGAG
ATGGAGGTAT GGGCATTGGA GGCTTATGGA GCATCTAGTA CCTTACGCGA AATCTTAACT
GTAAAATCTG ACGACGTAGT AGGTCGTGCC AAAACTTACG AAGCGATTGT AAAAGGTGAG
ACAATGCCAG AACCAGGATT GCCAGAATCT TTCAACGTAT TGATGCACGA GCTCAAAGGT
CTTGGATTGG ATATCAGACT TGAAGAATAA
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| Protein sequence | MLTNQTARVN FASVKHVPEY PDFLDIQIKS FQEFFQMETK SEDRVHEGLY HTFKENFPIS
DTRNQFVLEF LDYFVDPPRY TIQECIERGL TYSVPLKARL KLYCTDPEHE DFETIVQDVY
LGTIPYMTAS GTFVINGAER VVVSQLHRSP GVFFGQSFHA NGTKLYSARI IPFKGSWIEF
ATDINNVMYA YIDRKKKLPV TTLFRAIGFE RDKDILEIFD LAEEIKVSKT GLKKYIGRRL
AARVLNTWHE DFVDEDTGEV VSIERNEIIL DRDTVLDEDN IQEILEADVK TILLHKEDSQ
ATDYTIIHNT LQKDPTNSEK EAVEHIYRQL RNAEPPDEET ARGIIDKLFF SDQRYNLGDV
GRYRINKKLG LDTPMEKQVL TKEDIITIVK YLIELINSKA EVDDIDHLSN RRVRTVGEQL
AAQFGVGLSR MSRTIRERMN VRDNEVFTPI DLINAKTLSS VINSFFGTNQ LSQFMDQTNP
LAEITHKRRL SALGPGGLSR ERAGFEVRDV HYTHYGRLCP IETPEGPNIG LISSLAVFSK
VNGMGFIETP YHKVTNGKVD LKDMTYLTAE DEEGLKIGMA NIALDDKANI TEEKVVVKED
GDFPVIEPNE VQYIDVAPNQ IASISASLIP FLEHDDANRA LMGSNMMRQA VPLLRPEAPI
VGTGLERRVA SDARVLMNAE GDGTVDYVDA DKIIITYDRT DEQKLVSFDA DETVYNLIKF
QKTNQGTCIN LKPIVEKGER VKKGQVLCEG YATENGELAL GRNMKVAFMP WKGYNFEDAI
VISERAVRED LFTSIHIDEY ALEVRDTKLG AEELTNDIPN VSEDATKDLD EYGMIRIGAE
VRPGDILIGK ITPKGESDPT PEEKLLRAIF GDKAGDVKDA SLKASPSLYG VVIDKKLFSR
AVKDKRKRSK DKEDVAQLEA NYNAKFETLR SKLLEKLYSL VAEKTSEGVV NDLGEEIVPK
GKKYTKKVLE GIEDYAHLTS AGWTDDKHIN GLIDDLLHNY RIRENDLQGG LRRDKFTIAV
GDELPAGILK LAKIYVAKKR KLKVGDKMAG RHGNKGIVAR IVRDEDMPFL EDGTPVDIVL
NPLGVPSRMN IGQIYETVLG WAGQKLGKKF ATPIFDGASL EQINELTDEA GVPRFGHTYL
YDGGTGERFD QKATVGVIYM IKLGHMIDDK MHARSIGPYS LITQQPLGGK AQFGGQRFGE
MEVWALEAYG ASSTLREILT VKSDDVVGRA KTYEAIVKGE TMPEPGLPES FNVLMHELKG
LGLDIRLEE
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