| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0405 |
|---|
| Symbol | |
|---|
| ID | 8366811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 514619 |
|---|
| End bp | 515305 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644982826 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003140529 |
|---|
| Protein GI | 256819250 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1611] Predicted Rossmann fold nucleotide-binding protein |
|---|
| TIGRFAM ID | [TIGR00725] conserved hypothetical protein, DprA/Smf-related, family 1
[TIGR00730] conserved hypothetical protein, DprA/Smf-related, family 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC ATTCAAAAGT TTGGAACGAA ACTAAAACAC ACGACGCTTG GTCGATATTT
AAAATAATGG GAGAATTTGT ACACGGCTAT GAGCAGATGA GCTCCATAGG ACCTTGTGTA
TGTATTTTTG GTTCGGCACG TATTAAGCCT GAAACACCTT ATTACGAACT CACTGTGCGT
ATTGCCCAAA AGATAGTAGA TGAAGGCTTC GGTATTATAA CCGGCGGTGG ACCTGGTATT
ATGGAGGCGG GCAACAAAGG TGCGCACCTA AACAAAGGTG TATCGGCAGG ACTGAATATT
GATTTGCCTT TCGAGCAGAC GAATAACTCT TATATCGACC ACGACAAGAA TATTAAATTC
AACTACTTCT TTGCGCGTAA GGTGATGTTT GTAAAGTATT CTAAGGCATT TGTAGCAATG
CCTGGGGGCT TTGGTACCCT CGACGAACTC TTCGAGACCC TCACTCTCGT GCAAACTTAT
AAAATAGACA AAATTCCTAT TATTTTAGTC GGTACAGATT ATTGGAGCGG ACTTGTAGAC
TGGATAAAAA AGATATTATT AGAGAAATTT AATAATATTA GTGCTGAGGA TTTGGATTTG
TTTCACTTAG TAGACACCGA AGACGAAGTG ATTAAAGTCA TTGAAGATTT CTACAACAAC
AAACAACAGT TAAAACCAAA TTTTTAG
|
|---|
| Protein sequence | MKKHSKVWNE TKTHDAWSIF KIMGEFVHGY EQMSSIGPCV CIFGSARIKP ETPYYELTVR
IAQKIVDEGF GIITGGGPGI MEAGNKGAHL NKGVSAGLNI DLPFEQTNNS YIDHDKNIKF
NYFFARKVMF VKYSKAFVAM PGGFGTLDEL FETLTLVQTY KIDKIPIILV GTDYWSGLVD
WIKKILLEKF NNISAEDLDL FHLVDTEDEV IKVIEDFYNN KQQLKPNF
|
|---|
| |