Gene Coch_0347 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0347 
Symbol 
ID8366753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp433751 
End bp435445 
Gene Length1695 bp 
Protein Length564 aa 
Translation table11 
GC content44% 
IMG OID644982768 
Productsingle-stranded-DNA-specific exonuclease RecJ 
Protein accessionYP_003140471 
Protein GI256819192 
COG category[L] Replication, recombination and repair 
COG ID[COG0608] Single-stranded DNA-specific exonuclease 
TIGRFAM ID[TIGR00644] single-stranded-DNA-specific exonuclease RecJ 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACTACA CTTGGAACTT TAAACCACTA CCACCGCAAG CCATTGTCGC TACTTTACAA 
CAAGAGCTCA ACATCAGTGA GCCTTTGGCG ATTCTTTTAG CACAACGAGG CGTGACTACC
TTTCAGCAAG CAAAAGATTT CTTCCGTCCT ACATTCTCAC AATTACATAA TCCTTTCCTG
ATGAAAGGAA TGAAAGAAGC CGTTGCTCGT TTAGATCGAG CCTTAAAAAG TAACGAAACA
ATCCTTATCT ACGGCGATTA CGATGTCGAT GGTACTAGCG CCGTTTCTTT CATGGAGCGC
TATCTTAGCA ACTTCACTTC TAAATTACAC ACCTACGTCC CTGACCGATA TACCGAAGGC
TATGGTATTT CTTTTCAAGG AATAGACTAT GCCGAGGCGC AAGGTTGTAC CCTCATCATT
GCGCTCGACT GCGGTATCAA AGCCATTGAT AAAGTAGAAT ATGCCAAAGA AAAAGCCATT
GACTTTATTA TTGCCGACCA CCACCGTCCT TCGGAACAAG TGCCAGATGC TATTGCCGTG
CTCGACCCCC AGCAAGCTGA TTGTCCTTAC CCATATAAAG AACTCTGTGG TTGTGGTTTG
GGGTTTAAAT TAGCCCAAGC TTATCACGAG TATTTACAAC GCCCGTTCAG CGAACTCATT
CCTCTTTTAG ACTTAGTAGC CGTCGCTACT GCTGCCGATA TCGTACCAAT GAACGGCGAG
AACCGTTGCT TGACGTACTT TGGTTTAGAA GTACTCAATA ATAATCCGTC GGCAGGCGTA
AAAGCGCTTT TTGGAGAGCA TCAAGGTAAA ATTACCATAA CCGATGTAGT GTTTAAAGCA
GCACCTCGTG TGAATGCAGC AGGACGTATA GAACACGGCA AATACGCCGT TGCTCTCCTC
ACCGAAACTG ATGAAGAACA AGCTGTACTT AAAGCTAAGG AAATAGATGC GCTTAATACA
CATAGGAAAG AGCTGGACAG CAGTATCGCC GCCGAAGCTC TCAACCAAAT AGAGGCAAAT
GGCGAGCAAG AACACTATAC GTCGGTAGTG TTTAATGAAG AATGGCATAA AGGGGTGATA
GGCATTGTCG CCTCTCGCCT TATAGAGCAT TATTATCGTC CTACGGTAGT CTTTACTAAG
AGTGGTAATA AGTATGCTGC TTCAGCGCGT TCGGTACAAG GATTTGATAT TTACGAAGCT
TTGGAACAAT GCAGTGAGTA TTTGGAGCAG TTCGGTGGTC ATAAATACGC TGCCGGACTC
ACTTTGCGCC CTGAACAGTA TCCGCTTTTC AAAAATGCCT TTGAAGAAGT AGTAAAGCAA
ACCATAGACT CTTCGCTTCG CATTCCCAAA CTCTTTATAG ATACCGCTTT GCCATTGAGT
AAACTTACTC AAAAGTTGTA TAACGTACTC AAACAGTTCG AGCCTTTCGG TCCTCTGAAT
CTCCCTCCGC TTTTCTATGC CGAAAACGTA ATAGATACCG GCTTTGCCAA ACGTATCGGT
AAAGATGAAG AACACTTAAA ACTCACCTTA AAAGAAGTAG GCACTACCTC GTATTATGAC
GCAGTAGGCT TTGGCTTAGC ACATAAACTC CCCATAGTAA CCTCTGGCAG ACCTTTCAGC
ATAGTATATT CAATAGAAGA AAATCAGTGG AATGGCAGAG CAAGTTTGCA GTTACAAATA
AGAGATATAA AATAA
 
Protein sequence
MDYTWNFKPL PPQAIVATLQ QELNISEPLA ILLAQRGVTT FQQAKDFFRP TFSQLHNPFL 
MKGMKEAVAR LDRALKSNET ILIYGDYDVD GTSAVSFMER YLSNFTSKLH TYVPDRYTEG
YGISFQGIDY AEAQGCTLII ALDCGIKAID KVEYAKEKAI DFIIADHHRP SEQVPDAIAV
LDPQQADCPY PYKELCGCGL GFKLAQAYHE YLQRPFSELI PLLDLVAVAT AADIVPMNGE
NRCLTYFGLE VLNNNPSAGV KALFGEHQGK ITITDVVFKA APRVNAAGRI EHGKYAVALL
TETDEEQAVL KAKEIDALNT HRKELDSSIA AEALNQIEAN GEQEHYTSVV FNEEWHKGVI
GIVASRLIEH YYRPTVVFTK SGNKYAASAR SVQGFDIYEA LEQCSEYLEQ FGGHKYAAGL
TLRPEQYPLF KNAFEEVVKQ TIDSSLRIPK LFIDTALPLS KLTQKLYNVL KQFEPFGPLN
LPPLFYAENV IDTGFAKRIG KDEEHLKLTL KEVGTTSYYD AVGFGLAHKL PIVTSGRPFS
IVYSIEENQW NGRASLQLQI RDIK