Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_0347 |
Symbol | |
ID | 8366753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 433751 |
End bp | 435445 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644982768 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_003140471 |
Protein GI | 256819192 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACTACA CTTGGAACTT TAAACCACTA CCACCGCAAG CCATTGTCGC TACTTTACAA CAAGAGCTCA ACATCAGTGA GCCTTTGGCG ATTCTTTTAG CACAACGAGG CGTGACTACC TTTCAGCAAG CAAAAGATTT CTTCCGTCCT ACATTCTCAC AATTACATAA TCCTTTCCTG ATGAAAGGAA TGAAAGAAGC CGTTGCTCGT TTAGATCGAG CCTTAAAAAG TAACGAAACA ATCCTTATCT ACGGCGATTA CGATGTCGAT GGTACTAGCG CCGTTTCTTT CATGGAGCGC TATCTTAGCA ACTTCACTTC TAAATTACAC ACCTACGTCC CTGACCGATA TACCGAAGGC TATGGTATTT CTTTTCAAGG AATAGACTAT GCCGAGGCGC AAGGTTGTAC CCTCATCATT GCGCTCGACT GCGGTATCAA AGCCATTGAT AAAGTAGAAT ATGCCAAAGA AAAAGCCATT GACTTTATTA TTGCCGACCA CCACCGTCCT TCGGAACAAG TGCCAGATGC TATTGCCGTG CTCGACCCCC AGCAAGCTGA TTGTCCTTAC CCATATAAAG AACTCTGTGG TTGTGGTTTG GGGTTTAAAT TAGCCCAAGC TTATCACGAG TATTTACAAC GCCCGTTCAG CGAACTCATT CCTCTTTTAG ACTTAGTAGC CGTCGCTACT GCTGCCGATA TCGTACCAAT GAACGGCGAG AACCGTTGCT TGACGTACTT TGGTTTAGAA GTACTCAATA ATAATCCGTC GGCAGGCGTA AAAGCGCTTT TTGGAGAGCA TCAAGGTAAA ATTACCATAA CCGATGTAGT GTTTAAAGCA GCACCTCGTG TGAATGCAGC AGGACGTATA GAACACGGCA AATACGCCGT TGCTCTCCTC ACCGAAACTG ATGAAGAACA AGCTGTACTT AAAGCTAAGG AAATAGATGC GCTTAATACA CATAGGAAAG AGCTGGACAG CAGTATCGCC GCCGAAGCTC TCAACCAAAT AGAGGCAAAT GGCGAGCAAG AACACTATAC GTCGGTAGTG TTTAATGAAG AATGGCATAA AGGGGTGATA GGCATTGTCG CCTCTCGCCT TATAGAGCAT TATTATCGTC CTACGGTAGT CTTTACTAAG AGTGGTAATA AGTATGCTGC TTCAGCGCGT TCGGTACAAG GATTTGATAT TTACGAAGCT TTGGAACAAT GCAGTGAGTA TTTGGAGCAG TTCGGTGGTC ATAAATACGC TGCCGGACTC ACTTTGCGCC CTGAACAGTA TCCGCTTTTC AAAAATGCCT TTGAAGAAGT AGTAAAGCAA ACCATAGACT CTTCGCTTCG CATTCCCAAA CTCTTTATAG ATACCGCTTT GCCATTGAGT AAACTTACTC AAAAGTTGTA TAACGTACTC AAACAGTTCG AGCCTTTCGG TCCTCTGAAT CTCCCTCCGC TTTTCTATGC CGAAAACGTA ATAGATACCG GCTTTGCCAA ACGTATCGGT AAAGATGAAG AACACTTAAA ACTCACCTTA AAAGAAGTAG GCACTACCTC GTATTATGAC GCAGTAGGCT TTGGCTTAGC ACATAAACTC CCCATAGTAA CCTCTGGCAG ACCTTTCAGC ATAGTATATT CAATAGAAGA AAATCAGTGG AATGGCAGAG CAAGTTTGCA GTTACAAATA AGAGATATAA AATAA
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Protein sequence | MDYTWNFKPL PPQAIVATLQ QELNISEPLA ILLAQRGVTT FQQAKDFFRP TFSQLHNPFL MKGMKEAVAR LDRALKSNET ILIYGDYDVD GTSAVSFMER YLSNFTSKLH TYVPDRYTEG YGISFQGIDY AEAQGCTLII ALDCGIKAID KVEYAKEKAI DFIIADHHRP SEQVPDAIAV LDPQQADCPY PYKELCGCGL GFKLAQAYHE YLQRPFSELI PLLDLVAVAT AADIVPMNGE NRCLTYFGLE VLNNNPSAGV KALFGEHQGK ITITDVVFKA APRVNAAGRI EHGKYAVALL TETDEEQAVL KAKEIDALNT HRKELDSSIA AEALNQIEAN GEQEHYTSVV FNEEWHKGVI GIVASRLIEH YYRPTVVFTK SGNKYAASAR SVQGFDIYEA LEQCSEYLEQ FGGHKYAAGL TLRPEQYPLF KNAFEEVVKQ TIDSSLRIPK LFIDTALPLS KLTQKLYNVL KQFEPFGPLN LPPLFYAENV IDTGFAKRIG KDEEHLKLTL KEVGTTSYYD AVGFGLAHKL PIVTSGRPFS IVYSIEENQW NGRASLQLQI RDIK
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