| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0309 |
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| Symbol | |
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| ID | 8366715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 390442 |
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| End bp | 392820 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644982730 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_003140433 |
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| Protein GI | 256819154 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACGCAAA AACAATTGAA AAATAAAATT TTACATATCC TTTTCTTAAC AAAGCAAAAA
CTCCGCCACC ACCCTATCAA AACAGCGATA GCAGTGCTAT GCTTTGTGTG GTATGCTTTC
TGCCTGCCTC GTCAGCTCTT CCCACAACCT TATGCCACGG TGTTGGAAAG CAACGAGGGT
AAATTACTTG GGGCTAAGAT AGCAAACGAC GGACAATGGC GCTTCCCCGA AGTAGACAGT
GTGCCCTACC GCTTTAAAAT GTCGGTATTG CAGTTCGAAG ATGCTCATTT TTATTACCAT
TGGGGGGTAA ATCCCATATC AGTAGCCAAG GCTCTCTATC GCAATGTGAG CAGTGGTAAA
GTACAGCGCG GGGGCAGTAC GCTCACCCAG CAGGTGATAC GCATCGCTCG TGAGCACCAA
CAGCGCACTT ATTTCGAAAA ACTTATTGAA ATGATATGGG CTACCCGTTT GGAATTCCGT
TATTCTAAGG AGAGTATTCT CAAACTCTAC GCCTCTCACG CGCCCTTTGG TGGCAACGTT
GTGGGACTCG ATATGGCAGC CTGGCGTTAC TTTGGTGTCG CTCCTCATCA GCTCTCGTGG
GCACAATCGG CTACATTGGC AGTCCTCCCT AATGCACCCA GCCTTATCTT TCCTGGTAAA
AACCAAGAAC GTCTCTTGCA GAAACGCAAT GCGTTGCTTT ACAAACTCCT CCTTAAAAAT
ATCATCGATA AAGAAACATA CGATTTGGCA CTTTTAGAAC CTCTTCCTGC TGAACCTCAC
CCTATTCCAC AACTCGCGCC TCACCTACTT ATTTTTGCTT CTAAAACCCA AGAAGGTGAG
CGCATTAGCT CTACGGTGTC GTTAAACTTG CAAGAGAAGG TAAACAGCCT TATAGCAGGG
TATTACACCC ACTACTCGCA ATCTGAAATC TATAATATGG CAGCTTTGGT GGTAGAGGTA
AAAACACGAA AAGTGCTCGC CTACGTAGGC AATACCCCTA CCGATACCGA CCATCAAAAA
GATGTGGATA TCGTGCACGC ACCTCGCAGT ACGGGCAGTG TGCTCAAACC TTTTCTCTAT
GCAGCGATGT TGCACGAGGG AGAACTCCTT CCCACCCAGT TAGTACCCGA TGTTCCTACT
CAAATAGGAG GCTATTCACC TCAGAATTTT AGCAATAGTT TTGAAGGTGC TGTCTCTGCC
GATATGGCTT TAGCCAAATC GCTAAACATT CCGTTTGTAT GGCTCTTAAA GCAGTTTACT
ACCTATCGTT TCTACGATGT GTTACAACAC TTGCAACTGA AAAACATCAA CCGCCACCCC
GACTATTATG GGCTTTCTAT CATATTAGGA GGTGCCGAGA GCAATCTGTG GGATTTGGCA
CAGGCATATA CCAATCTGGC TTCGGAAACG GAAGTCTTTG CGCGCACTCA GCACTATCGT
ACTAAGGAAT TTCAGCACTT GCGTTATACC GATACTGCCC CTTTAGATTT CGGAAAAAAC
ACTCGCGAAC TACCTACACT CAGGGCAGGA GCGCTCTACA AGATGTTTAG TGCAATGAAG
GAAGTGAACC GTCCTACTGA TGATGTAGCG TGGCGTTATT ACGAGTCGGC GCGCAAGATA
GCGTGGAAAA CGGGTACCAG CTTTGGCAAT AAAGATGCGT GGGCAATTGG TGCTACGCCT
GAATATGTGG TGGCTGTGTG GGTAGGTAAT GCCACAGGCG AAGGGCGTCC CACCCTCACA
GGGGCTACCT ATGCCGCTCC AGTAATGTTC AGTATCTTCA ACGCTCTCCC TCCTACTTCG
TGGTTTTCAC AGCCCTTAGA CGACCTACGC GAGGTTTCCG TCTGTGCGAA TTCTGGTTTC
CTTGCTAAAC CCGAATGCCC TAAGCAAACA GTACTCAGCA ACATCGCTCC TAAGGAAGTG
GGGCAATGTC CTTATCATAA GCTCGTACAC CTCGACCGTG ATGAGCAGTA CCAAGTAAAC
ACCTCGTGTG AGTCTCCACA AAATATTGTA AACAAAGCGT GGTTCGTATT ACCTCCCGTA
ATGGAATGGT ATTACAAACA GCAACACATT CACTACAAGC CGTTGCCCCC CTTACGTGAA
GACTGCACAC AAAGCAATCT GCAAAGAGGC TTAGATTTTG TTTACCCCAA ACACCAAAGT
GTACTCTACA CCACTAAAAC TTTTGGGGGC GAGCAACAAC CCTTTACAGC GAAAGCTGCC
AATCGCGAAG GCAAGGTTTT TTGGTATTTA GACGATACTT TTCTCGGCAC CACCGAAACC
TTTCACGAAA TGAATATCTT TGCCCCCAAA GGTAATCACA CCCTGCGTAT CATCAACGAA
AAAGGCGAAG AAAGAGCCAT TACCATCATA TGCCGATAA
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| Protein sequence | MTQKQLKNKI LHILFLTKQK LRHHPIKTAI AVLCFVWYAF CLPRQLFPQP YATVLESNEG
KLLGAKIAND GQWRFPEVDS VPYRFKMSVL QFEDAHFYYH WGVNPISVAK ALYRNVSSGK
VQRGGSTLTQ QVIRIAREHQ QRTYFEKLIE MIWATRLEFR YSKESILKLY ASHAPFGGNV
VGLDMAAWRY FGVAPHQLSW AQSATLAVLP NAPSLIFPGK NQERLLQKRN ALLYKLLLKN
IIDKETYDLA LLEPLPAEPH PIPQLAPHLL IFASKTQEGE RISSTVSLNL QEKVNSLIAG
YYTHYSQSEI YNMAALVVEV KTRKVLAYVG NTPTDTDHQK DVDIVHAPRS TGSVLKPFLY
AAMLHEGELL PTQLVPDVPT QIGGYSPQNF SNSFEGAVSA DMALAKSLNI PFVWLLKQFT
TYRFYDVLQH LQLKNINRHP DYYGLSIILG GAESNLWDLA QAYTNLASET EVFARTQHYR
TKEFQHLRYT DTAPLDFGKN TRELPTLRAG ALYKMFSAMK EVNRPTDDVA WRYYESARKI
AWKTGTSFGN KDAWAIGATP EYVVAVWVGN ATGEGRPTLT GATYAAPVMF SIFNALPPTS
WFSQPLDDLR EVSVCANSGF LAKPECPKQT VLSNIAPKEV GQCPYHKLVH LDRDEQYQVN
TSCESPQNIV NKAWFVLPPV MEWYYKQQHI HYKPLPPLRE DCTQSNLQRG LDFVYPKHQS
VLYTTKTFGG EQQPFTAKAA NREGKVFWYL DDTFLGTTET FHEMNIFAPK GNHTLRIINE
KGEERAITII CR
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