| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0147 |
|---|
| Symbol | |
|---|
| ID | 8366549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 172245 |
|---|
| End bp | 176576 |
|---|
| Gene Length | 4332 bp |
|---|
| Protein Length | 1443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644982566 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_003140273 |
|---|
| Protein GI | 256818994 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGACA AAATCATACT ATTTAGCATC AAAAATAAGC TATTTGTAGG ATTCATGACC
CTTATGCTTA TTTTTTGGGG CGTATGGAGT GCTACAAGGC TCCCCATTGA TGCCGTTCCA
GATATTACTA ACAACCAAGT ACAAATCATC ACCTCTACCC CTACTTTGGC CTCACAAGAG
GTAGAGCAAC TGGTTACTTT TCCTATTGAG CAAGCCATCG CCAATATTCC TGGGCTGGAG
GAAACACGCA GTATTTCCCG CTTTGGACTC TCGGTCATCA CAGCCGTCTT TAGCGAGGAT
ATGGACATCT ACTTTGCCCG CCAGCTAGTC AATGAAAAGC TCAAGGAGGC ACAGGAGCAA
ATCCCTCAAG GCATAGGCTC GCCCGAACTC TCACCCGTGA GTACCGGACT GGGGGAGGTA
TATCAGTATA TCATTCGCCC TACGGAACAG AGCAAAAACA AATATTCCGC CAAAGACCTC
CGCACCATGC AGGACTGGAT CGTGGCTCGC CAACTCTATG GTACCAAAGG AATAGCCGAA
ATCAACAGCT TTGGAGGCGA ACTCAAGCAG TATGAGGTGG TTATAGACCC CGATCGCCTC
CGTGCCATGG GGGTGAGTGT CAGTGATATT TTCACTGCTT TGGAGCAGAA CAACCAAAAT
ACAGGAGGTG CCTATATCGA CAAGCGCCCC AATGCCTACT TTATCCGAGG AATAGGCATG
GCTCGCTCCC TTGAAGACAT AGGCAATATA GCCGTAGGCA AGCACACCCC TCCCCTCTTT
ATCAAGCATG TAGCCGAGGT ACGCTTGGGC AGTGCCATCC GCTATGGTGC CCTTAGCTAT
AATGGCGAGG TGGATGCCGT AGGTGGGGTA GTGATGATGC TCAAGGGCGA AAACAGCCAC
GAGGTAGTCA GTCGTATCAA AGAAAAACTG CCCACCATAC AGCAATCCCT ACCTGAAGAT
GTAGTGATAG AGCCATTCTT AGACCGCACG GACTTGGTAC AACGCGCCAT CCATACAGTA
GAGAAAAACC TCTTAGAGGG GGCGCTGATT GTCATCTTCA TCTTAGTACT TTTCTTAGGG
AACCTGCGTG CCGGACTGAT TGTTGCCACG GCCATTCCGC TCTCCTTGCT CTTTGCCTTA
GGAATGATGA ACCTCTTTGG AGTAAGTGCC AACCTGATGA GCTTGGGAGC GATAGATTTC
GGAATTATCG TAGATGGATC GGTTATCGTG GTAGAAGCAG TGATGCACCA CTTGGCGATC
CGAAAGAACC ACCAACGACT TACCCAAGCA CAAATGGATG AGGAGGTATT CCATTCCGCT
TCCAAAATAC GCAGTAGTGC CGCCTTCGGA GAGATTATCA TCCTGATGGT GTATATTCCC
ATTCTTACGT TGGTAGGAGT AGAGGGCAAG ATGTTCCGCC CTATGGCACA AACCGTCGTC
TTTGCTATTT TGGGTGCCCT GATCCTTTCC CTGACTTATA TCCCTGCCAT GAGCGCTTTG
CTCCTACCTA AAACAGTAAG TGACAAGCGC AGTTTTGCCG AGCGAATGAT AAGCTGGCTC
TACCGTCACT ACCAACCGCT CTTTGTCCGT TCTATCCGCC TTAGGGGATG GATAATAGGC
AGTACCGTGG TACTGTTCGT TCTTGCGGTA GGCATTTTCA GCCGTATGGG AGGTGAGTTT
ATTCCACAAC TACAAGAAGG CGATTTTGTT TTTGAATGTA TTCTGCCACC GGGCACTTCC
CTGAAGCAGA GCTTGGAGAC TTCCATGCAG GCCTCTCGCC TGATTCGTGA GTTCGACGAG
GTGAAAATGG TGATAGGCAA AACAGGTTCT GCCGAAATAC CTACCGACCC TATGCCGCTG
GAAGCCTCCG ATATTGTGAT CGTACTCAAG AGCCAAGACC AATGGAAAAG TGGTCGCTCC
TATGAGGAAT TAGGAGATGC CATCATTGAG CGGCTCAAGG ATATTCCTGG GGTCTTCTTT
GAGAAAAGCC AGCCTATACA AATGCATTTC AACGAATTGA TGACAGGTGT CAGACAGGAT
GTAACGATAA AAATCTTTGG AGAAAACATG GATACCCTCG CCCACTACGC CCAAAGAGTA
AGCCAACTTA TCCAGAAAAC AGAAGGTGCT ACCGCCCCAC AGGTCGAAAA AGTAAGCGGA
CTTCCGCAAA TCAATGTTAC TTACGATCGG GTACGCTTGG CCAACTACGG ACTTTCGGTG
CAAGAGGTCA ATGAGGTACT CAGTACCGCC TTTGCTGGTA AGAAGGCTGG GGTTGTCTTC
GAGAACGAAC GAAGGTTCGA CCTTGTGGTA CGCCTCGATA GCCTCCATCG TACCGGAATT
GACGATGTAC AGCATATGAT GGTAGCTACC GAAAATGGGC AGGTGCCGAT GAGCCAATTG
GCCACTATCA AATATGAATT AGGCCCCGCA CAGGTGAGCC GTGAAGCAGG CAAGCGCCGT
ATCGTCATTG GCTTCAACGT GCAAGGGCGC GATGTGCAGA GTGTGGTGAG TGATATAGAA
CAAAAATTAA AGGGCGTAAA GCTCCCTACG GGCTATTACT TTACCTATGG CGGTCAGTTT
GAGAACCTAC AAAAAGCCAC CGATAGGCTC CTTATTGCCG TACCGGTAGC CCTGCTCTTG
ATTTTTTTCT TGTTATACCT TGCTTTCCAT TCTATAAAAC AATCATTGCT CATCTTTAGC
GCTATCCCGA TGAGTGCCAT TGGGGGCGTA TTTGCCTTGC TTCTTCGGGG AATGCCTTTT
AGTATTAGTG CGGGTATTGG TTTTATCGCG CTCTTTGGGG TAGCAGTGCT CAACGGTATA
GTGCTTATTG GCACTTTCAA CCAGCTGAAA AAAGAAGGAA TGACCAACCT TTTGCATCGC
GTGATTACGG GTACCGAAAT GCGTTTACGC CCTGTGCTAA TGACGGCTAT GGTGGCGAGC
TTAGGTTTCC TCCCTATGGC GCTCAGTCAA GGAGCAGGAG CAGAAGTACA ACGTCCCTTA
GCCACTGTGG TCATCGGAGG GTTAGTATCG GCTACCTTCC TCACCCTCTT CGTGCTTCCG
TTGCTTTACA TCGCTTTCAA TAGTACCTTT TCTTGGCGCC GTCCTTCAGC TAAAGTACTC
ACGATAGCCC TATTGCTTAT CAGTCCTATA GCGCTACACG CTCAGCAGTC TTACTCGCTA
CAAGAAATAG AGCAAATAGC CCTTAAGAAC AATGGAGTGA TTAAGGCAGC ACAACTCAAG
CTACAAGGAG CAAGTTCTAA AGAGCGAACC TCTTTTGAAT TGGCTAAAAC AGACTTTACA
GGGCAATACG GGCAGTACAG CAGTGCTGAA AAAGACCTTT CAGTAGGTGT ATCACAATCT
ATTCCTTTGC CTACAGTATT TGCTGCTCGC AAAAAGCTCT ATCAAGCAGA GACACAATTA
CAACAAGGGC AATTAGCCCT TCAGCAGAAT GAACTGAAGC GGCAAGTGCG CAACGCATAT
CAGCAATTGC AATATTTGAC TTTTAAAGAG GAACAGCTCT TGCAGCTTGA TAGTCTCTAC
AATAATTTTA TTCGCATTGC TGAAGTACGC TATAAAGCAG GGGATACCAA GAAGATAGAT
ATTAACACTG CCCAAGTGAA GAAAGGAGAA ATAAGTTTGT TACTTCAACA GAACAAAACT
ATACAACAAG CTACCTATCG CAACTTGCGT ACGTTAATGC AAACAGAAGA AGCATTTACC
ATTACCAAGT CGCCCGTGTA TGAGCCTTTG TTACTCAGTG AGCCTTCGGA TGTACAACTC
TCTCAGCACC CTTTGGTACA ACTCAGCTAT CAAGAAGCAA ACATAGCTGA GCACAACAAA
CGTCTAGAGC GTGCCCAAGC CCTGCCCGAC CTTACATTGG GCTATACCAA TCAGTCTCTT
ATAGGAATGC AAACCATTGG AGGGGTAGAG ACCTATACTG ATAGAAGTAA ACGTTTTCAC
TTTGCCACCA TAGGGCTTTC AGTTCCTATT TTTACCGCTA CCCGTGCCAA GGTGAAAGCT
TATAAATATC AGAAAGAAGC AGCTATAGAA GCAGCTCAAC AAACAGAAAA ACAGCTTAAA
ACTCAATGGA TAAATCTGCA AGAGGAATAC CAACTGAATT TGCAAAAATA TCAGTTTTAC
AAACAAGAAG CGCTACCTGA AGCCGAGCGC ATTATCCGAG CCAATCAGTT AGGGTATAGC
GCAGGTGAAA TAAGCTATGT GGAGTACCTT TACACCCTAC AGACAGCCGT AGATACCCGC
TTGGCATACC TTGAGAGTAT CGAGGCGCTT AATCAAAAAG TAATAGAAAT ACAATCCCTT
TTAAACCAGT AA
|
|---|
| Protein sequence | MLDKIILFSI KNKLFVGFMT LMLIFWGVWS ATRLPIDAVP DITNNQVQII TSTPTLASQE
VEQLVTFPIE QAIANIPGLE ETRSISRFGL SVITAVFSED MDIYFARQLV NEKLKEAQEQ
IPQGIGSPEL SPVSTGLGEV YQYIIRPTEQ SKNKYSAKDL RTMQDWIVAR QLYGTKGIAE
INSFGGELKQ YEVVIDPDRL RAMGVSVSDI FTALEQNNQN TGGAYIDKRP NAYFIRGIGM
ARSLEDIGNI AVGKHTPPLF IKHVAEVRLG SAIRYGALSY NGEVDAVGGV VMMLKGENSH
EVVSRIKEKL PTIQQSLPED VVIEPFLDRT DLVQRAIHTV EKNLLEGALI VIFILVLFLG
NLRAGLIVAT AIPLSLLFAL GMMNLFGVSA NLMSLGAIDF GIIVDGSVIV VEAVMHHLAI
RKNHQRLTQA QMDEEVFHSA SKIRSSAAFG EIIILMVYIP ILTLVGVEGK MFRPMAQTVV
FAILGALILS LTYIPAMSAL LLPKTVSDKR SFAERMISWL YRHYQPLFVR SIRLRGWIIG
STVVLFVLAV GIFSRMGGEF IPQLQEGDFV FECILPPGTS LKQSLETSMQ ASRLIREFDE
VKMVIGKTGS AEIPTDPMPL EASDIVIVLK SQDQWKSGRS YEELGDAIIE RLKDIPGVFF
EKSQPIQMHF NELMTGVRQD VTIKIFGENM DTLAHYAQRV SQLIQKTEGA TAPQVEKVSG
LPQINVTYDR VRLANYGLSV QEVNEVLSTA FAGKKAGVVF ENERRFDLVV RLDSLHRTGI
DDVQHMMVAT ENGQVPMSQL ATIKYELGPA QVSREAGKRR IVIGFNVQGR DVQSVVSDIE
QKLKGVKLPT GYYFTYGGQF ENLQKATDRL LIAVPVALLL IFFLLYLAFH SIKQSLLIFS
AIPMSAIGGV FALLLRGMPF SISAGIGFIA LFGVAVLNGI VLIGTFNQLK KEGMTNLLHR
VITGTEMRLR PVLMTAMVAS LGFLPMALSQ GAGAEVQRPL ATVVIGGLVS ATFLTLFVLP
LLYIAFNSTF SWRRPSAKVL TIALLLISPI ALHAQQSYSL QEIEQIALKN NGVIKAAQLK
LQGASSKERT SFELAKTDFT GQYGQYSSAE KDLSVGVSQS IPLPTVFAAR KKLYQAETQL
QQGQLALQQN ELKRQVRNAY QQLQYLTFKE EQLLQLDSLY NNFIRIAEVR YKAGDTKKID
INTAQVKKGE ISLLLQQNKT IQQATYRNLR TLMQTEEAFT ITKSPVYEPL LLSEPSDVQL
SQHPLVQLSY QEANIAEHNK RLERAQALPD LTLGYTNQSL IGMQTIGGVE TYTDRSKRFH
FATIGLSVPI FTATRAKVKA YKYQKEAAIE AAQQTEKQLK TQWINLQEEY QLNLQKYQFY
KQEALPEAER IIRANQLGYS AGEISYVEYL YTLQTAVDTR LAYLESIEAL NQKVIEIQSL
LNQ
|
|---|
| |