Gene Coch_0099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0099 
Symbol 
ID8366501 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp119780 
End bp120871 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content43% 
IMG OID644982518 
ProductGTP-dependent nucleic acid-binding protein EngD 
Protein accessionYP_003140225 
Protein GI256818946 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0012] Predicted GTPase, probable translation factor 
TIGRFAM ID[TIGR00092] GTP-binding protein YchF 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.76867 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAG GAATTGTAGG ACTGCCCAAC GTGGGGAAGT CTACTTTATT TAATTGTTTA 
TCAAATGCTA AAGCACAGAG TGCTAACTTC CCTTTTTGTA CTATAGAGCC TAACTTGGGT 
GTTGTAAACG TACCTGACCC CCGTTTAGAG AAACTCGAAA GCCTTGTGAA ACCTGAGCGT 
GTAATGCCTG CAACGGTAGA GATTGTAGAC ATAGCTGGAC TAGTGAAAGG CGCCAGTAAA 
GGCGAAGGTT TGGGTAACCA ATTTTTGGGA AATATACGTG AGTGTAATGC GATTATTCAC 
GTATTGCGTT GTTTTGAGAA TGACAACATC GTACACGTTG ATGGAAGTGT AGACCCTATA 
CGCGATAAAG AAACTATTGA TATAGAATTG CAGTTAAAAG ACCTTGAAAC GGTTGAAAAA 
CGCTTGGATA AAGTAACGCG TGCAGCGAAA GCAGGCGATA AGAAAGTGGC GAAAGAAATG 
GATTTGCTCA ACCGTGTAAA AGAGGCTTTG CTCACGGGGG TTTCGGCTCG TGCCGTGCAA 
GTAAGCGATG AAGAAAAAGA ATTGCTGGAC AGCTTCCAAC TGCTCACTAC CAAGCCTGTG 
CTATATGTGT GCAATGTAGA TGAAAAATCG GCTAAAAATG GGAACGCTTA TGTGGAACAA 
GTGAAAGATG CCGTAAAAGG TGAAGATGCC GAAGTGATTG TATTGGCAGT AGCCACTGAA 
GCTGACATCA CCGAATTGGA AAGTTACGAA GAACGCCAAA TGTTCTTGGA GGATATAGGT 
TTAGAAGAAC CAGGAGCCTC TAAACTCATT CGTGCAGCCT ATCACCTGCT GAACCTACAA 
ACTTATTTCA CCGCAGGGGT AAAAGAAGTG CGTGCGTGGA CGATTCATCA AGGAGACACT 
GCTCCTCAAG CCGCAGGGGT AATTCACACC GATTTTGAGA AAGGATTTAT TCGTGCTGAG 
GTAATCCCTT ATAATGATTT TATTACTTAT GGCAGTGAGG CTAAAGTAAA AGAAGCTGGT 
AAAATGCGCG TGGAAGGTAA AGAATATATC GTGAAAGACG GCGATATTAT GCACTTCCGC 
TTTAACGTAT AA
 
Protein sequence
MKAGIVGLPN VGKSTLFNCL SNAKAQSANF PFCTIEPNLG VVNVPDPRLE KLESLVKPER 
VMPATVEIVD IAGLVKGASK GEGLGNQFLG NIRECNAIIH VLRCFENDNI VHVDGSVDPI 
RDKETIDIEL QLKDLETVEK RLDKVTRAAK AGDKKVAKEM DLLNRVKEAL LTGVSARAVQ 
VSDEEKELLD SFQLLTTKPV LYVCNVDEKS AKNGNAYVEQ VKDAVKGEDA EVIVLAVATE 
ADITELESYE ERQMFLEDIG LEEPGASKLI RAAYHLLNLQ TYFTAGVKEV RAWTIHQGDT 
APQAAGVIHT DFEKGFIRAE VIPYNDFITY GSEAKVKEAG KMRVEGKEYI VKDGDIMHFR 
FNV