Gene Coch_0063 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0063 
Symbol 
ID8366465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp83219 
End bp85558 
Gene Length2340 bp 
Protein Length779 aa 
Translation table11 
GC content39% 
IMG OID644982482 
ProductBeta-N-acetylhexosaminidase 
Protein accessionYP_003140189 
Protein GI256818910 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3525] N-acetyl-beta-hexosaminidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0268197 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATAA AATTAACTTC CGCACTTTTG TTATTGATAA CGATTATTTC GTGTAAATCA 
ACTACAAACA ATCAAGGAGA GAGTACTGCT AATTATGAGG TAATTCCACT ACCCGAAATG
ATTACCACTC CCCAAGCTGA TGCCGATAAA CCTTTCGTGC TTACGGCTGA TACCAAAATC
ACCTATCCAG AAGGTGATGC TTCTTTACAG CAGTACGCTG GATTCTTGCA AGAGTATATC
AAAAAACAAG CAGGAATTGA AGTGAATATC ACTCCTAACC AAAACAATGA GACCAACACT
ATTGCCTTGT TGCAAAATTA CCAAAACAAC AACAAAGAGG CTTACCAAGT AGTGGTGAAT
GCCAAGAACA TTACTGTAAA TGGAGCTTCT AAAGCGGGTA CTTTCTATGG AGTACAACTC
TTGAGAAAAT CCATTCCGGT ACAAAAAGTA GGCAAAGTCA TCTTCCCTGC CAAAGAAATA
ACCGATAAAC CCTATTTCGC TTATCGTGGT GCACATTTAG ATAGTGCCCG TCACTTTTTT
AATGCCGACT CTGTGCGCAT TTATATCGAT ATGTTAGCAC TCCACAATAT CAATAAATTC
CATTGGCATC TCACCGATGA TCAAGGTTGG CGTTTTGAAT CTAAAAAATA CCCCGAACTT
ACTGTGGTAG GAAGCACTCG TAGCCAAACT ATGGTAAACA AACAGTGGGA CACCTTCGAT
GGTAAACCTC ACGGAGGCTT CTATACTCAG CAAGAAATGA AAGACATTGT AAAATATGCC
GCCGACCGCA ATATTACCGT TATTCCTGAG ATAGACCTCC CAGGACATAT GGTTGCTGCT
TTGGCTACTT ATCCACAATT AGGCTGTACA GGAGGCCCTT ATAAAGTAAG AGAAACTTGG
GGCATAGCCG AAGATGTACT TTGTGCTGGC AACCCCGAAA CTTATGATTT CATTAAAAAT
ATATTAGAAG AAGTAACTGA AGTATTCCCT TCAGAATATA TCCATATAGG AGGTGACGAA
TGTCCTAAAG ATAGCTGGAA GAAATGCCCT AAATGCCAAG CTAAGATAAA AGAGTTAGGT
ATTAAAGGTG ATGCTAAACA CACAGCCGAA GAATACTTAC AAAGTCACAT AATTACATTC
GCTGAAGATG TATTAGCTAA AAAAGGTCGC AAAATCATTG GTTGGGACGA AATCCTTGAA
GGAGGTTTAG CTCCTAATGC TACTGTAATG TCTTGGAGAG GTATCGGGGG CGCTATAGAA
GCAGCCAAGT CTAACCACGA TGCTATTATG ACCCCTGTTT CTTATTGCTA CTTCGACTAT
TATCAAACAG ATAAAACCGA TAAAGAACCT CTTGCTATTG GTGGTTATGT ACCGGTAGAA
CGTGTTTACT CTTTCAATCC TTACCCCGAT GCGCTTAATA AAGAACAACA AAAACACATC
TTAGGAGTAC AAGCCAATGT TTGGACAGAG TATATCAAGA CTTTCAAACA CGTACAATAT
ATGGTATTGC CTCGTTTTGC AGCCTTAGCC GAAGTACAAT GGGAAGACCC TGCAAAACCT
AAAGACTACA ATCAGTTTTT ACAACGCTTA ATGCGCTTAC TTCCTATCTA CCAGTTAGAA
GGTTATAACT ATGCTAAACA CATATTCGAT CTTCGTGCCG AAGTAAAACC TGAGGTAGGT
GATATACAAG TAACACTCTC TTGTTTACAA GACACACCTA TCTATTACAC TACCGATGGG
AGTGAACCTA CTAAGAGTTC TAACGTGTAT AAAGAACCTT TAAAACTCAC TCAAGATACA
CATCTAAAAG CTAAAGTATT CGGTCAGGAA ACCGAAAGTA GCTTCGAACA ACAGTTCCTT
TTCAACAAAG CAACCGTACG CCCTATTGAG TTCCTCAGTA AACCTAGTTA CAACTATACT
TTTGGGGGCG CTATTACCTT AGTTGATGGT AGAAAAGGGG GTACTAATTC ACGCTCTGGA
GAATGGTTAG GTTTTAGTGA AGCACCTTGT GAAGTGGTGA TTACCCTAAA AGAAAATACT
CCTGTAAAAG AAGTGCGCTT CAATGCTCTT ATTGAAACAG GTGATTGGAT TTACCCTCCA
ACCAGCTTTG AAGTATCGGG GTCTAAGGAC GGTAAAAGTT ATGATTTACT CGCTAAAGAA
AACTATGCGC TTCCTAAGGA ACCTCTCAAA GAAATAAAAA CTTACTCTCT TTCTTTCCCT
GAAAAAGAAG TAACCTATCT AAAAGTGAAG ATAAATGGAG TAAACAAAAT TCCTTCTTTC
CATCAAGGAG CAGCTGGTAA ACCTGGTTTC CTCTTCATCG ATGAAATTCA AGTATTGTAA
 
Protein sequence
MKIKLTSALL LLITIISCKS TTNNQGESTA NYEVIPLPEM ITTPQADADK PFVLTADTKI 
TYPEGDASLQ QYAGFLQEYI KKQAGIEVNI TPNQNNETNT IALLQNYQNN NKEAYQVVVN
AKNITVNGAS KAGTFYGVQL LRKSIPVQKV GKVIFPAKEI TDKPYFAYRG AHLDSARHFF
NADSVRIYID MLALHNINKF HWHLTDDQGW RFESKKYPEL TVVGSTRSQT MVNKQWDTFD
GKPHGGFYTQ QEMKDIVKYA ADRNITVIPE IDLPGHMVAA LATYPQLGCT GGPYKVRETW
GIAEDVLCAG NPETYDFIKN ILEEVTEVFP SEYIHIGGDE CPKDSWKKCP KCQAKIKELG
IKGDAKHTAE EYLQSHIITF AEDVLAKKGR KIIGWDEILE GGLAPNATVM SWRGIGGAIE
AAKSNHDAIM TPVSYCYFDY YQTDKTDKEP LAIGGYVPVE RVYSFNPYPD ALNKEQQKHI
LGVQANVWTE YIKTFKHVQY MVLPRFAALA EVQWEDPAKP KDYNQFLQRL MRLLPIYQLE
GYNYAKHIFD LRAEVKPEVG DIQVTLSCLQ DTPIYYTTDG SEPTKSSNVY KEPLKLTQDT
HLKAKVFGQE TESSFEQQFL FNKATVRPIE FLSKPSYNYT FGGAITLVDG RKGGTNSRSG
EWLGFSEAPC EVVITLKENT PVKEVRFNAL IETGDWIYPP TSFEVSGSKD GKSYDLLAKE
NYALPKEPLK EIKTYSLSFP EKEVTYLKVK INGVNKIPSF HQGAAGKPGF LFIDEIQVL