Gene Coch_0007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_0007 
Symbol 
ID8366407 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp7084 
End bp9282 
Gene Length2199 bp 
Protein Length732 aa 
Translation table11 
GC content39% 
IMG OID644982425 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_003140134 
Protein GI256818855 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.623627 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAACAA ACATCGACTT AGAAGAAGAA AATAAAGCCA TTGCGCGCGA GTATAAAGAA 
CTCTTGCGTA TCAGCTATCA AACCCTGAGT GATGAAGATA AAAAGCTCAT TCGCTTGGCG
TTTGACACCG CTGTTGATGC GCACAAAAAC CAACGCCGAA AAAGTGGGGA ACCTTACATT
TTTCACCCTA TTGCCGTAGC TAAAATTGTT GCTTCACAAA TAGGATTAGA CGCCGTAGCC
ATTGCGTCGG CTTTGCTACA CGATGTAGTA GAAGATACTG ACTATACGAT TGAAGATATG
GAACGGCTTT TTGGTAACAC TGTAGCACAT ATTGTGGAAG GACTTACCAA AATTTCGAGT
ATGAGCCGTG AAAATGATAT CTCTTTACAA GCCGAGAACT TCCGAAAGCT CCTCCTCACG
ATGAACGACG ATGTACGTGT GATTCTCATC AAAATTGCTG ACAGACTCCA CAATATGCAA
ACGATGGATT CGATGGCAGA ATACAAACAA GCCAAAATAG CTTCGGAAAC ACTCTATATT
TATGCACCTA TTGCTCACCG CATTGGTTTG TATAACATCA AAACAGAATT AGAAGACCTC
GCCCTTAAAT ACACTGACCC TGAGCGCTAC AATAGTATCC TAAACAAAAT GGAGGAATCC
AAAGAAGAAC AACAGGAATA CATTGAGGCG TTTACCAAAA TCGTAGAAAC TTCTTTGACG
CAACAAAAAA TTGATTATTC CATCAAAGGG CGACCTAAAT CAATCTATTC TATTTACAGA
AAAATGGAAT CGCAAGGCGT GAGTTTTGAA GAAGTTTACG ATAAATTTGC GATTCGCATC
ATCTATAAAA GTGAACCAGC CGAAGAAAAG TTTTTGGCTT GGAAAATATA CTCTATTGTT
ACCGACCACT TCCGTCCCAA TCCCACCCGA TTGCGCGATT GGATTTCCTC ACCCAAATCT
ACAGGTTACG AAGCCTTACA CATTACCGTA ATGGGTCCAA AAGGCAAATG GGTAGAGGTG
CAAATACGCA GCGAACGTAT GCACGAAATT GCCGAAAAAG GTTATGCAGC CCATTTTAAG
TATAAGCACG GCAACCAAAA AGAAGAAGGC ATCGAAATGT GGCTTAATAG GTTGCAAGAA
ATCTTTGAAA ACAGCGAGGC AAATGCGGTG GACTTTGTAG AAGACTTTAA ACTCAACTTG
TATTCCAAAG AGATTTTCGT CTTTACCCCT AATGGCGAGA TAAAATCCCT CCCGAAAGGC
GCAACTCCCT TAGATTTTGC TTTTTATATC CATACAGGAG TGGGCTTAAA AACGCGGGGA
GCTAAAGTAA ACAATAAATT AGTGCCCTTA AACTATGTGT TAAAGAGTGG CGAAACGGTG
GAAATCATCA CTGCCGAAAA TGTAAAACCT ACTAAAAACT GGCTCAACTA TGCCACCACA
GCCAAAGCTC GTAGTAAGAT AAAAAATGCT TTAAAAGAAG AGACAAAAAC CGTTGCCGCC
GAAGGAAAAG AGATTTTAGT ACGAAAATTA AAACAATTGA AGATTACTCT CAACGAGGAA
GTGATGAATG AGATGGTGAG TTACTTCAAA ACAAAGACGA GCTTAGATAT TTACTATCAA
GCAGGCACGG GAGAAATCAG CAACCAAATG TTGAAAGACT TTGTATCGCA TCGCACGTCT
TTCTTTGGCT TATTCAAAAA TAAAGCAGTA AAAAAACCTA CCGACGAACC CATTTATTCG
CCCAACGTTC ACTATGATAG CATTGTGTTC GGCAAAGAAG AAGAATCGTT AGACTATACT
TTTTCAAAAT GTTGCAATCC TATCCCTGGT GATCCCATTT TTGGATTCGT TACTATCAAC
GAAGGGGTGA AAGTACACAA AAAAACTTGC CCGAATGCTA TTTCGATGCA ATCGAATTAC
GCTTATCGTA TCATTCAAGC CAAATGGGTA AAATCTGATG AAAGAGATTT CAAAGTGAGT
CTTAAAATTA GTGGTATTGA CCGCGATGGA CTCATCAGCG ATATCTCAAA AGTGATTTTG
GATAGCAAAT TTGTAAAACT TACCAACATT AATATTGATA CCGAAGGCAA TGTATTCAGC
GGGAAAGTTT CTATTTCTAT CAACAATAAT GCAACTTTAA AGAAATTGAT GCAAGATATT
AAAAACATTA AAGGAGTAGA TAAAGTAAAC AGACTCTAA
 
Protein sequence
METNIDLEEE NKAIAREYKE LLRISYQTLS DEDKKLIRLA FDTAVDAHKN QRRKSGEPYI 
FHPIAVAKIV ASQIGLDAVA IASALLHDVV EDTDYTIEDM ERLFGNTVAH IVEGLTKISS
MSRENDISLQ AENFRKLLLT MNDDVRVILI KIADRLHNMQ TMDSMAEYKQ AKIASETLYI
YAPIAHRIGL YNIKTELEDL ALKYTDPERY NSILNKMEES KEEQQEYIEA FTKIVETSLT
QQKIDYSIKG RPKSIYSIYR KMESQGVSFE EVYDKFAIRI IYKSEPAEEK FLAWKIYSIV
TDHFRPNPTR LRDWISSPKS TGYEALHITV MGPKGKWVEV QIRSERMHEI AEKGYAAHFK
YKHGNQKEEG IEMWLNRLQE IFENSEANAV DFVEDFKLNL YSKEIFVFTP NGEIKSLPKG
ATPLDFAFYI HTGVGLKTRG AKVNNKLVPL NYVLKSGETV EIITAENVKP TKNWLNYATT
AKARSKIKNA LKEETKTVAA EGKEILVRKL KQLKITLNEE VMNEMVSYFK TKTSLDIYYQ
AGTGEISNQM LKDFVSHRTS FFGLFKNKAV KKPTDEPIYS PNVHYDSIVF GKEEESLDYT
FSKCCNPIPG DPIFGFVTIN EGVKVHKKTC PNAISMQSNY AYRIIQAKWV KSDERDFKVS
LKISGIDRDG LISDISKVIL DSKFVKLTNI NIDTEGNVFS GKVSISINNN ATLKKLMQDI
KNIKGVDKVN RL