| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0007 |
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| Symbol | |
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| ID | 8366407 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 7084 |
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| End bp | 9282 |
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| Gene Length | 2199 bp |
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| Protein Length | 732 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644982425 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_003140134 |
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| Protein GI | 256818855 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.623627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACAA ACATCGACTT AGAAGAAGAA AATAAAGCCA TTGCGCGCGA GTATAAAGAA
CTCTTGCGTA TCAGCTATCA AACCCTGAGT GATGAAGATA AAAAGCTCAT TCGCTTGGCG
TTTGACACCG CTGTTGATGC GCACAAAAAC CAACGCCGAA AAAGTGGGGA ACCTTACATT
TTTCACCCTA TTGCCGTAGC TAAAATTGTT GCTTCACAAA TAGGATTAGA CGCCGTAGCC
ATTGCGTCGG CTTTGCTACA CGATGTAGTA GAAGATACTG ACTATACGAT TGAAGATATG
GAACGGCTTT TTGGTAACAC TGTAGCACAT ATTGTGGAAG GACTTACCAA AATTTCGAGT
ATGAGCCGTG AAAATGATAT CTCTTTACAA GCCGAGAACT TCCGAAAGCT CCTCCTCACG
ATGAACGACG ATGTACGTGT GATTCTCATC AAAATTGCTG ACAGACTCCA CAATATGCAA
ACGATGGATT CGATGGCAGA ATACAAACAA GCCAAAATAG CTTCGGAAAC ACTCTATATT
TATGCACCTA TTGCTCACCG CATTGGTTTG TATAACATCA AAACAGAATT AGAAGACCTC
GCCCTTAAAT ACACTGACCC TGAGCGCTAC AATAGTATCC TAAACAAAAT GGAGGAATCC
AAAGAAGAAC AACAGGAATA CATTGAGGCG TTTACCAAAA TCGTAGAAAC TTCTTTGACG
CAACAAAAAA TTGATTATTC CATCAAAGGG CGACCTAAAT CAATCTATTC TATTTACAGA
AAAATGGAAT CGCAAGGCGT GAGTTTTGAA GAAGTTTACG ATAAATTTGC GATTCGCATC
ATCTATAAAA GTGAACCAGC CGAAGAAAAG TTTTTGGCTT GGAAAATATA CTCTATTGTT
ACCGACCACT TCCGTCCCAA TCCCACCCGA TTGCGCGATT GGATTTCCTC ACCCAAATCT
ACAGGTTACG AAGCCTTACA CATTACCGTA ATGGGTCCAA AAGGCAAATG GGTAGAGGTG
CAAATACGCA GCGAACGTAT GCACGAAATT GCCGAAAAAG GTTATGCAGC CCATTTTAAG
TATAAGCACG GCAACCAAAA AGAAGAAGGC ATCGAAATGT GGCTTAATAG GTTGCAAGAA
ATCTTTGAAA ACAGCGAGGC AAATGCGGTG GACTTTGTAG AAGACTTTAA ACTCAACTTG
TATTCCAAAG AGATTTTCGT CTTTACCCCT AATGGCGAGA TAAAATCCCT CCCGAAAGGC
GCAACTCCCT TAGATTTTGC TTTTTATATC CATACAGGAG TGGGCTTAAA AACGCGGGGA
GCTAAAGTAA ACAATAAATT AGTGCCCTTA AACTATGTGT TAAAGAGTGG CGAAACGGTG
GAAATCATCA CTGCCGAAAA TGTAAAACCT ACTAAAAACT GGCTCAACTA TGCCACCACA
GCCAAAGCTC GTAGTAAGAT AAAAAATGCT TTAAAAGAAG AGACAAAAAC CGTTGCCGCC
GAAGGAAAAG AGATTTTAGT ACGAAAATTA AAACAATTGA AGATTACTCT CAACGAGGAA
GTGATGAATG AGATGGTGAG TTACTTCAAA ACAAAGACGA GCTTAGATAT TTACTATCAA
GCAGGCACGG GAGAAATCAG CAACCAAATG TTGAAAGACT TTGTATCGCA TCGCACGTCT
TTCTTTGGCT TATTCAAAAA TAAAGCAGTA AAAAAACCTA CCGACGAACC CATTTATTCG
CCCAACGTTC ACTATGATAG CATTGTGTTC GGCAAAGAAG AAGAATCGTT AGACTATACT
TTTTCAAAAT GTTGCAATCC TATCCCTGGT GATCCCATTT TTGGATTCGT TACTATCAAC
GAAGGGGTGA AAGTACACAA AAAAACTTGC CCGAATGCTA TTTCGATGCA ATCGAATTAC
GCTTATCGTA TCATTCAAGC CAAATGGGTA AAATCTGATG AAAGAGATTT CAAAGTGAGT
CTTAAAATTA GTGGTATTGA CCGCGATGGA CTCATCAGCG ATATCTCAAA AGTGATTTTG
GATAGCAAAT TTGTAAAACT TACCAACATT AATATTGATA CCGAAGGCAA TGTATTCAGC
GGGAAAGTTT CTATTTCTAT CAACAATAAT GCAACTTTAA AGAAATTGAT GCAAGATATT
AAAAACATTA AAGGAGTAGA TAAAGTAAAC AGACTCTAA
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| Protein sequence | METNIDLEEE NKAIAREYKE LLRISYQTLS DEDKKLIRLA FDTAVDAHKN QRRKSGEPYI
FHPIAVAKIV ASQIGLDAVA IASALLHDVV EDTDYTIEDM ERLFGNTVAH IVEGLTKISS
MSRENDISLQ AENFRKLLLT MNDDVRVILI KIADRLHNMQ TMDSMAEYKQ AKIASETLYI
YAPIAHRIGL YNIKTELEDL ALKYTDPERY NSILNKMEES KEEQQEYIEA FTKIVETSLT
QQKIDYSIKG RPKSIYSIYR KMESQGVSFE EVYDKFAIRI IYKSEPAEEK FLAWKIYSIV
TDHFRPNPTR LRDWISSPKS TGYEALHITV MGPKGKWVEV QIRSERMHEI AEKGYAAHFK
YKHGNQKEEG IEMWLNRLQE IFENSEANAV DFVEDFKLNL YSKEIFVFTP NGEIKSLPKG
ATPLDFAFYI HTGVGLKTRG AKVNNKLVPL NYVLKSGETV EIITAENVKP TKNWLNYATT
AKARSKIKNA LKEETKTVAA EGKEILVRKL KQLKITLNEE VMNEMVSYFK TKTSLDIYYQ
AGTGEISNQM LKDFVSHRTS FFGLFKNKAV KKPTDEPIYS PNVHYDSIVF GKEEESLDYT
FSKCCNPIPG DPIFGFVTIN EGVKVHKKTC PNAISMQSNY AYRIIQAKWV KSDERDFKVS
LKISGIDRDG LISDISKVIL DSKFVKLTNI NIDTEGNVFS GKVSISINNN ATLKKLMQDI
KNIKGVDKVN RL
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