| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_3212 |
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| Symbol | secD |
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| ID | 8392547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 8802 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013161 |
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| Strand | - |
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| Start bp | 3285181 |
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| End bp | 3286593 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644981158 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_003138885 |
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| Protein GI | 257060997 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.718211 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAGAC AGCGTTTATT ATTGGGTTTC ATTGCGGTAT TAGCTATTAC TTCCATCTTC
ATTTTGTCCA CCCTTGGACT ACAACTAGGA TTAGACTTGA AAGGGGGAGC TCAATTAACC
ATTCTTGTCA AACCCACCAA AGAAGTCCCG CGCATCAGTC CTGAAGACTT ACAAGCGGAA
AAAACCATCC TAGAAAATCG GGTGAATGCC TTGGGGGTAA CGGAAGCTTT TGTTCAGACC
TTGGGAGAAG ATAAAATCGT TATTCAGTTA CCCGGAGTCA CTGACCCTGA ACAGGCCGAA
CGGGTGTTAG GGGGAACGGC ACAATTAGAA TTTCGGGAAC AAAAACAGGG TACAGAAGGG
CAATTTCAAG CCGAATTTAC GATTAAACGT CAGTATGAAG CTGAATTGGC CACCCTCAGA
CAAGCAGCCA AAACCCCCGA AACTGCCCAA CGGATAGAGG AACTGAATAA ATCCATCGAA
AAATCTAACG AAGCTGTCTT ATCGCTGTTT CAATCGGTTG ATTTAACGGG AAAAAACCTC
AAGAGTGCCC GTCCGAGTCC TACTCAGTCA GGCAATAATT GGGACGTAGC TATTAGCTTT
GATGATGCCG GGGGCAAAAA GTTCGCAGAA TTGACCAAAA ACCTCGCAGG AACGGGTCGT
AGTATCGGAA TTTTCCTCGA TAATAGCCTT ATTAGTGCCC CCGTAGTTGG AGTAGAGTTT
GCCAACACTG GAATCACCGG AGGAAATGCC GTCATTACGG GTAACTTTAC CATTGACAGT
GCCAATGACC TCGCTGTACA AATTCGCGGA GGTTCCTTGC CTTTTCCCGT GGAAGTCGTA
GAAAACCGTA CCGTTGGCGC AACCTTGGGT CAAGATAGTA TCCGAAGCAG TATCTATGCG
GGGTTAGCCG GATTAGTTCT AGTATTAATC TTTATGGCGG TTTATTATCG TCTTCCTGGG
GTCATTGCTG ATGTTGCATT GGGAATTTAC ACGCTATTAA CCTTAGCTGC TTATTCCTTA
ATTGGCGTAA CTTTGACGCT GCCTGGAATT GCTGGATTTA TTCTCAGTAT TGGTATGGCG
GTAGATGCAA ATGTACTAAT TTTTGAGCGA ACCCGTGAGG AATTGCGAGA AGGCAATAGT
CTTTATCGTT CCGTTGAAGC TGGATTTTAC AACGCTTTTT CGAGTATTTT AGATAGTAAT
GTCACCACCT TAATCGCCTG TGGTGCGCTA TTTGGCTTAG GGTCAGGATT AGTGAAAGGG
TTTGCTTTAA CATTGGCGAT TGGGGTTGCT GTTAGTATGT TTACGGCCTT AACCTGTAGT
CGAACCTTCC TCTTATTAAC GGTTTTAGGA GTACCCACAG TTCGTCAGAA ACCTCAACTC
TTTTGCCCTA ATTTACCCAC AATTGCTAAG TAA
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| Protein sequence | MQRQRLLLGF IAVLAITSIF ILSTLGLQLG LDLKGGAQLT ILVKPTKEVP RISPEDLQAE
KTILENRVNA LGVTEAFVQT LGEDKIVIQL PGVTDPEQAE RVLGGTAQLE FREQKQGTEG
QFQAEFTIKR QYEAELATLR QAAKTPETAQ RIEELNKSIE KSNEAVLSLF QSVDLTGKNL
KSARPSPTQS GNNWDVAISF DDAGGKKFAE LTKNLAGTGR SIGIFLDNSL ISAPVVGVEF
ANTGITGGNA VITGNFTIDS ANDLAVQIRG GSLPFPVEVV ENRTVGATLG QDSIRSSIYA
GLAGLVLVLI FMAVYYRLPG VIADVALGIY TLLTLAAYSL IGVTLTLPGI AGFILSIGMA
VDANVLIFER TREELREGNS LYRSVEAGFY NAFSSILDSN VTTLIACGAL FGLGSGLVKG
FALTLAIGVA VSMFTALTCS RTFLLLTVLG VPTVRQKPQL FCPNLPTIAK
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