| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_2218 |
|---|
| Symbol | |
|---|
| ID | 8391536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | + |
|---|
| Start bp | 2232065 |
|---|
| End bp | 2233723 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644980190 |
|---|
| Product | thiamine pyrophosphate protein TPP binding domain protein |
|---|
| Protein accession | YP_003137934 |
|---|
| Protein GI | 257060046 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3961] Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.209747 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACCA TCGGTGAGTA TTTATTTCAA CGCTTAAAAG AGCTAGGGGT TGATCATGTT
TTTGGAGTGC CGGGGGACTA TGTTCTTGGG TTAATGGATG TGTTGATTAA AAGTCCCCTA
GAATTAATCT GTACCTGTAA TGAACTCAAC GCCGGATATG CGGCAGATGC CTACGCAAGA
ATTAGAGGAT TAGGCGTTGT TTGTATTACC TATGGAGTTG GGGGGTTTAG TTTAGTTAAT
GCCGTCGTTG GAGCCTATGC AGAGAGAGTT CCCTTAGTCG TTATTAGTGG TGCTCCTAAT
AGTGCAGTCC GAAAAAATCA TCTCCTTTTG CACCATACAA CAGGAGATTA TAATCTCCAA
TTATCCATCA TGGAAAAGGT GACAGTTGCT TCTGTTATTT TAACTCAAGC GAGTCAAGCA
GCCAAGCAAA TTGATGAAGT TTTATCCGCC TGTCTTCATT ATAAACGACC CGTCTACATT
GAAATTCCTT TAGATGTTGT GAATCAACCC TGCACTTTTT CGGAGTCTTC CCTCAATGCG
ATTCCTCAAT TAACGGAATT AACCGATAAT GACGCATTAA AAGAAGCCAT CACAGAAGCC
TCTGAATTAC TCAAAAAAGC TAAGAATCCG ATTATTTTAG CTGGCGTTGA AATTGATCGA
TTTCAACTAA AAGAGCCCCT AATAAAACTC CTTGAAACAA CAGGTTATCC TATCGCTACT
ACTATTTTAG GCAAGTCTTG TCTTCCTGAA GTTCATCCGC AATTTATTGG TAATTATGTA
GGCGCACTTA GCCGAGATTA TGTTCGTCAA AGAGTAGAAA ACGCTGATTG TATTTTGTGT
TTAGGTGCAA TCATGTCTGA TATGAATTTA GGCATCTATA CGGCTCAACT GGATACTCAA
AAACTGATTA ATGCTAATTC TGAAAAAGTC AAAATTAAAC ATCATTTTTA TCAGCCGATT
TATTTAGGAG ATTTTATTGC AGGATTAATC CCTAATCTTA GCTATCAAGA GTCAAACCCT
TTAAATATCC AACCAGCTAT CAAACGATTA TCTAAAACCT TTGAATTTAA GACTGAAGAT
AAGTTAACAT CAGGTCGATT TTATGAAGCA ATTAATCATT TTTTGGATAA TGATTTGCTG
GTTATTTCTG ACACAGGAGA TTCAATTATA GCCAGTATTG ATCTATTAAT GCACAAAGGA
TCAGATTTTA TTGGACAAGC CTTTTATTTA TCAATTGGAT ATTCAATTCC GGCTTGTTTA
GGGGCTTCTT TTGCTGCTCC CGATAAGCGT ATTATTGTTT TGGTTGGAGA TGGTGCTTTT
CAGATGACAG CACAGGAATT ATCAACAATT ATTCGGCATC AACTCAATCC GATTATTTTC
TTAATTAACA ATGACGGTTA TACCATTGAG AGAGTAATTC ACGATGGAAT TTATAACGAT
CTTCAAGCTT GGAAATATCA TGAATTACCT CATATTTTTG GAGAGAGTTG GAGTTGTGAA
GTTTCCACAG AAGGAGAATT ACAAAAAGCC TTACTTTACG CAAAAATGAA TACTCATTGT
GTTTGTTTTA TTGAAGTTCA TCTTGATCGC TTCGATTGTT CTCCGGGTTT AATTCGCTTA
GGCAAAGCCA TTGAAAAAAT GCAAAAATTA AGTAATTAA
|
|---|
| Protein sequence | MMTIGEYLFQ RLKELGVDHV FGVPGDYVLG LMDVLIKSPL ELICTCNELN AGYAADAYAR
IRGLGVVCIT YGVGGFSLVN AVVGAYAERV PLVVISGAPN SAVRKNHLLL HHTTGDYNLQ
LSIMEKVTVA SVILTQASQA AKQIDEVLSA CLHYKRPVYI EIPLDVVNQP CTFSESSLNA
IPQLTELTDN DALKEAITEA SELLKKAKNP IILAGVEIDR FQLKEPLIKL LETTGYPIAT
TILGKSCLPE VHPQFIGNYV GALSRDYVRQ RVENADCILC LGAIMSDMNL GIYTAQLDTQ
KLINANSEKV KIKHHFYQPI YLGDFIAGLI PNLSYQESNP LNIQPAIKRL SKTFEFKTED
KLTSGRFYEA INHFLDNDLL VISDTGDSII ASIDLLMHKG SDFIGQAFYL SIGYSIPACL
GASFAAPDKR IIVLVGDGAF QMTAQELSTI IRHQLNPIIF LINNDGYTIE RVIHDGIYND
LQAWKYHELP HIFGESWSCE VSTEGELQKA LLYAKMNTHC VCFIEVHLDR FDCSPGLIRL
GKAIEKMQKL SN
|
|---|
| |