| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_1993 |
|---|
| Symbol | |
|---|
| ID | 8391309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | + |
|---|
| Start bp | 2012761 |
|---|
| End bp | 2014224 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644979974 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003137719 |
|---|
| Protein GI | 257059831 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.702751 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0246521 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCCC CTATCATCGG TAAACTCAAT CGTCCCCTAC CTTGGATTTT AGCCCTCATG
ACCGGTGGCG TTCTACTGGT GGGGGTGACA ACCTATAAAA TGGTCGAAAC CCCTTCCGAA
CAAGTCGAAC TCAACAAGTT AACCGTCCCC GTCGAACGAG AAACCCTACC GATAGAAATT
GAAGCAAGCG GAACCGTAGA ACCGATTGAA AGTGTCAATA TTAGCCCCAA AACCCCTGGA
AGATTAGTTA GACTCCTGGT AGAACAGGGA ATGCCCGTCA AAGAAGGGCA AGTTCTTGCA
GTGATGGAAA ATACCGAAAT CAGAGCCCAA GGAAAGCAAG CGCAAGCTAA TTACGGACAA
GCGATGGCTA CCCTCGAATC CGCTAAAATT CGTATTCCTA ATGAAATTAA CCAAGCGCAA
ACCCGCTTTA TGCAAGCCCA AGCGCAGCTA GAAGCAGCTA AAGCGAATTT AGAGCAAGCA
AAACAAAGGA TTCCCAAAGA TGTTGAGCAA CTGCAAGCCC AATTGATTGC GGCTCAATCG
AGAGCACAAT TAGCTTCCTC CCGTGTGACT CGTAATCGAG AATTGAAGAA TGAAGGGGCG
ATTACGGAGG ATAGTTTTGA CGCAGTGCTT AATGAGGCCT ATAATGCCCA AGCTAATGTC
AGAGAAATTG CGCAAAAGCT AGAACAAGCC AAAAATACGG CTCCCCCAGA AATTGGTCAA
CTTCAACAGG CCATTTATCA AGCTGAAGCG GCTCTCATGG ATGCCAAACT TGCTCTAGAA
GAACGTAAAA ATACCGCTCA AACTGAAATT GCTCAACTCG AAGCAGCAGC AGCAGCAGCC
CAAGCGGAAG TCGAAAGAAT CGTTATCCAG TTCCAAGATA CCGCCATTCG GGCTCCGTTT
GATGGTATTG TCACCCAAAA ATACGCCAAT GTTGGGGCGT TTGTTACTCC CACTACTTCC
GCTTCGAGTA CTGCTTCGGC GACTTCGAGT TCTATTTTAG CCTTAGCGCG AGGGTTAGAA
GTAGTGGCCA AAGTTCCTGA AGTGGATATC GGACGCTTAC AACGGGGACA GCCGGTCAGA
ATTATGGCTG ATGCCTATCC TAATGACACT TTTGAAGGCC AAGTTATTCG GATTGCTCCA
GAAGCGATTG TTGACCAAAA TGTTACCTCG TTTGAAGTCA CCATTGGCTT GATTACAGGA
CGGGATAAAC TCAAGTCTAA AATGAATGTA GATGTTACGT TTTTAGGGCA ACAATTGAGT
GATGCGTTGG TTATTCCTAC CGTTGCTATT GTTACCCAAG AAGGCGAAAC GGGAGTCATG
GTTCCCGATG CAGAAAATAA CCCCGAATTT AAACCCGTTA GTATTGGATT AGTGTTAGAT
GATAAAACGG AAATTCTGTC AGGATTAGAA CCCGGAGAAC GGGTTTTTAT TGATTTACCT
AAACCCAAAG AAAAGAAACC TTAA
|
|---|
| Protein sequence | MEAPIIGKLN RPLPWILALM TGGVLLVGVT TYKMVETPSE QVELNKLTVP VERETLPIEI
EASGTVEPIE SVNISPKTPG RLVRLLVEQG MPVKEGQVLA VMENTEIRAQ GKQAQANYGQ
AMATLESAKI RIPNEINQAQ TRFMQAQAQL EAAKANLEQA KQRIPKDVEQ LQAQLIAAQS
RAQLASSRVT RNRELKNEGA ITEDSFDAVL NEAYNAQANV REIAQKLEQA KNTAPPEIGQ
LQQAIYQAEA ALMDAKLALE ERKNTAQTEI AQLEAAAAAA QAEVERIVIQ FQDTAIRAPF
DGIVTQKYAN VGAFVTPTTS ASSTASATSS SILALARGLE VVAKVPEVDI GRLQRGQPVR
IMADAYPNDT FEGQVIRIAP EAIVDQNVTS FEVTIGLITG RDKLKSKMNV DVTFLGQQLS
DALVIPTVAI VTQEGETGVM VPDAENNPEF KPVSIGLVLD DKTEILSGLE PGERVFIDLP
KPKEKKP
|
|---|
| |