| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_0860 |
|---|
| Symbol | |
|---|
| ID | 8390168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | + |
|---|
| Start bp | 869671 |
|---|
| End bp | 871281 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644978879 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_003136633 |
|---|
| Protein GI | 257058745 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.872251 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATC AACCTGATCG GATCATCATT TTCGATACCA CCCTAAGAGA CGGGGAACAG
TCCCCCGGCG CAAGTTTAAC GGTTGAAGAA AAACTGACCA TCGCTCGCTC CCTTGCACGA
CTGGGAGTTG ATATCATTGA AGCGGGTTTT CCCTACGCTA GTCCGGGGGA CTTTGAAGCT
GTCCAAAAAA TCGCCCAAAC CGTCGGCACT GAAGATGGAC CGAGAATCTG CGGCTTAGCT
AGGGCAACCC AAAAAGACAT TCAAACCGCA GCAGAAGCGG TTAAACCCGC AGCGAAAGGA
CGCATTCACA CCTTTTTGGC CACTTCTGAC ATCCATTTAC AGTACAAACT CAAGAAAACC
CGTCAAGAAG TCTTAGCCAT AGTCCCCGAT ATGGTGGCCT ATGCAAAAAG CTTAGTGGAT
GATGTGGAAT TTTCTCCCGA AGATGCCGGA CGCAGTGACC CCGAATTTTT GTACCAAGTT
CTTGAAAGGG CGATCGCGGC TGGTGCAACC ACCATTAATA TCCCCGATAC TGTCGGTTAT
ACCACCCCTA GCGAATTTGG CGCATTAATC GGCGGGATTA AGCAAAACGT CCCCAATATT
GACCAAGCGA TCATCTCTGT CCATGGTCAC AATGACCTAG GGTTAGCCGT CGCTAATTTC
CTCGAAGCGG TCAAAAACGG AGCCCGACAA CTCGAATGTA CCATCAATGG CATCGGAGAA
CGGGCAGGTA ATGCAGCCTT AGAAGAATTG GTCATGGCCT TGCACGTTCG CCGTCAATAT
TTTAACCCCT TCCTCGGTCG TCCGCCCGAA TCCACGGAAC CCCTAACGAA TATCAATACC
AAGGAAATTT ACCGCACCTC CCGTCTAGTG TCGCAACTCA CCGGGATGAT GGTACAACCC
AATAAAGCCA TTGTGGGTAA AAATGCCTTT GCCCATGAGT CCGGCATTCA CCAAGATGGG
GTACTCAAAA ATAAGTTAAC CTACGAGATT ATGGACGCAG AATCCATCGG ATTAACCCAT
AATCAGATTG TTTTGGGTAA ACTTTCAGGA CGTAACGCTT TTCGGACTCG GTTGAAGGAA
TTGGGCTTTG AATTGTCCGA TACGGAGATT AATAACGCTT TCTTGCGGTT TAAAGAAGTC
GCTGACAAAA AGAAAGAAAT CACCGACTGG GACTTAGCAG CCATTGTGAA CGACGAAATG
CAGCAAGCCC CCGAATTATT CCGTTTAGAA TTAGTCCAGG TATCCTGTGG TGATCACGCC
TGTCCTACTG CTACCGTTAC CTTGAGAACG CCTGATGGTC AAGAATTAAC CGATGCAGCC
ATTGGAACCG GTCCGGTGGA TGCAGTTTAC AAAGCCATCA ACCGCGTGGT TCAGGTTCCT
AACGAGTTAA TTGAATTTTC GGTGAAGTCT GTTACGGCCG GCATTGATGC CATGGGAGAA
GTGACTATTC GTCTACGCTA TGAAGACAAA ATTTACTCAG GCTATGCAGC GAATACCGAT
ATTATCACGG CTTCAGCACG GGCTTATATT AGTGCGTTGA ATCGTCTGTA TGGATCAATT
CAAGACCAGT CAGCAACAGA AGTTACTAAG TCAGAAGTCG CGGCTATTTA G
|
|---|
| Protein sequence | MSNQPDRIII FDTTLRDGEQ SPGASLTVEE KLTIARSLAR LGVDIIEAGF PYASPGDFEA
VQKIAQTVGT EDGPRICGLA RATQKDIQTA AEAVKPAAKG RIHTFLATSD IHLQYKLKKT
RQEVLAIVPD MVAYAKSLVD DVEFSPEDAG RSDPEFLYQV LERAIAAGAT TINIPDTVGY
TTPSEFGALI GGIKQNVPNI DQAIISVHGH NDLGLAVANF LEAVKNGARQ LECTINGIGE
RAGNAALEEL VMALHVRRQY FNPFLGRPPE STEPLTNINT KEIYRTSRLV SQLTGMMVQP
NKAIVGKNAF AHESGIHQDG VLKNKLTYEI MDAESIGLTH NQIVLGKLSG RNAFRTRLKE
LGFELSDTEI NNAFLRFKEV ADKKKEITDW DLAAIVNDEM QQAPELFRLE LVQVSCGDHA
CPTATVTLRT PDGQELTDAA IGTGPVDAVY KAINRVVQVP NELIEFSVKS VTAGIDAMGE
VTIRLRYEDK IYSGYAANTD IITASARAYI SALNRLYGSI QDQSATEVTK SEVAAI
|
|---|
| |