| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cyan8802_0475 |
|---|
| Symbol | |
|---|
| ID | 8389781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8802 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013161 |
|---|
| Strand | - |
|---|
| Start bp | 470147 |
|---|
| End bp | 473986 |
|---|
| Gene Length | 3840 bp |
|---|
| Protein Length | 1279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644978511 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003136267 |
|---|
| Protein GI | 257058379 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3063] Tfp pilus assembly protein PilF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.894605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGTTA TTATTATTCG GGAAGAACAA GCAACAGAAA GCGGATTTAA CGCACTTTTA
AGTCTTAATA ATCAAGAATA TTCTATTACG GTTTCTGACC CCTTTCAACC TCAAGAGGAA
AACCTTTTAG AATGGTATTT TGAGGGGTGG TTAGCAACTC CAATGTTAAA CACCGAAACC
GCTAAGAAAG CAGCCGAAAG TGTCAACCAT TATGGACTGT CTTTATTTGA ACAGGTGTTT
AAGTCCGATA TTAATGCCTA TGCTAATTAC TGTCAGTTAA GACAGAATTT AAAAGATATT
CAATTTGAAA TTCAAAGTAA AACTCCTGAG TTTCAAGCGT TGCATTGGGA AGCGATGAAA
GATCCTGAGT TACCCCGTCC TTTTGCCGTA GATTGTTTGA TGACTCGTCG TTTAATTAAA
CCGATTAATA TTAGTATTAA TTTGCCTGTT TTTCCTGTTA TTAATTTATT AGCCGTTGTC
GCTCGACCTG ATGAAGATAG CGACATTGGT TATCGTACCA TTGCCCGTCC TTTAGTAGAG
TTAATTGATC AAGGTAATCT GAGGGTTAAT ATTGAGATTT TGCGTCCTGG GACTTACGAA
AGCTTATGTA AACATTTGGA GGCAAAAGGG AGTAATTATT ACCATATTAT CCATTTTGAT
CTACATGGCG GTTTGATGAC TTATCAGGAG TTCCAAAAGG GAGTAGAAAA GAATCGCTAT
TTGTATCAAC GGGGTTACGG GTTGGAACAT TTAGACCCAT ATCAAGGGGT GAAAGCTTTC
CTCTTTTTTG AAGGAGAAAA CAAAGGAAAA GCGGTTCCCG TTGAAGCGTC AGAGTTGACG
GCTTTACTTA CTGGGAAAAA TATTCTCGTT TGTATCTTGA ATGCTTGTCA ATCGGGGAAA
CAAATAGGGC TTGACAAAAC TCAAGAAAGG GACGATAATA AAAGTATGAT GGGGAAAGGT
GTCGCCCTGC AACATAGTAA TGAAACCAGT TTAAGTAGTC GTTTGATGCA AGCAGGAATG
CAGATGGTTG TCGGGATGAG TTATTCGGTG ACGGTTTCTG CGGCAAGGTT GATGATGCAA
GCGTTGTATA AGGAATTGTT TAATAGTAAA CCCATCACTG AGGCGATACG GTTAAGTCGG
TTGGAGTTGT ACAACAATAA AGGACGACAA GCTTATTTTA ATGAGATTAT TGATCTCGAA
GACTGGTTAC TTCCCGTGGT GTATAACAAT CAACCTGTTA ATTTTAATTT GCGGGAGATG
ACACCGGAAG AAACGGAGGA ATATTACACC CAATTAGAAC AAGACTATCG CTTCCCTTTA
CCCGTTTATG GTTTTGTGGG ACGGGACTTG GAGATACTAA AAATAGAAAA GTCTTTGTTA
AAACACAATG TTCTGTTATT GCAGGGGATG GGAGGAACAG GAAAGACGAC TTTATTAAAC
TATTTACGGG AATGGTGGTA TAGAACCCAT TATGCAGACA AGATCTTTTA TTTCGGTTAC
GATACGAAAG CTTGGACAAT TGATCAGATT TTGTTTGAGG TAGGACGGGG TATTTATAAT
AGGTTTGAGT TTGCGACGTT TCAAGCGATG GGAGACGCTG CAAAGTTAGG AAAGTTGATC
ACAGACTTAC GCAGTAGTAA TCATATTTTG ATTTTAGACA ATTTAGAATC AGTCACGGGA
CAACCTTTGG CAATTGAGAA TACGTTAGAC AAAACGGAAC AGGAGAAACT GAAACGGTTG
TTACAACGGT TGAAGGGAGG AAAGACAAAA ATTGTTTTGG GTTCTCGGAG TGATGAAAGT
TGGTTAAAAG ATGTTTATAC GAATAATAAT ATTAGTTATC TCTATCCGTT ACAGGGGTTA
GATAGTGAGT CACGGACGGA ACTTGCCGAA AAAATCCTTG AGGCAACTAT TCCTAACCCG
AAGAAACGGG ATAAGGTAAA GGAAGATGAT AATTTTAAGC GGTTAATGAA GCTTTTAGCG
GGGTATCCTT TAGCGATGGA AGTTGTCTTA GGAAATTTGA AAACCCAAAC TCCTCAAGAA
ATACTCAACG GGTTACAGTT AGCGGATGTT AATTTAGATA GGGATAGCGA AAATAAAACC
GAAAGTATCC TTAAGTGTGT GGAATATTCC CACAGCAACC TATCACCGGA TGCACAAAAG
TTATTACTCT GTTTAGCACC TTTTAGTAGT TTTATAAATC GGATAGTAAT ACCCAATTAT
GCCCAAGAAT TACAAAAATT AGAGCCATTT CAGGATTATC CTTTTGATCA GTTTGAGGAT
GCTATCTCAG AAGCGATCCA TTGGGGTTTG TTATCTGCAA TGTTGTTGGG TGATCCTCCA
CAACCAAAGG AAAACTTATT AGCCATTCAG CCTATTTTTC CCTATTTCCT GAAGACTAAG
GTAAAAGAAT TAGACACAGC AACCCAAGAA GCATTACAAG AAGGCTTTAA GAATCATTAT
CTTGAGTTAG TTAATTCTTA TGGTAGTTTA TTGCAGTCAA AAGAACCCCA AGAGAGACAA
ATAGGGATAT TTTACTGTCG TTTGGAGTAT GAAAACCTGT TTACTGGGTT ACAAATTTGT
TTGGAGAAAC AGGAGACAAT TGATATTTAT CAGTGTTTAA GTCAATATTT AGAGGTGATC
AATGACTATC AAAGTTGTCT CAAGTTAAAT GAGTTGGTTT GTAACGCAGT CCAAAATTAT
TCCCCAGAAG CAAAGGAAAC TCAGTTAGGG TTAGATATTG TTATTCCTTT TATGCAAAAA
GGCTATAATT ATCTAAAACT ACAGCAATAC GAAGCAGCAA AAGAAGCTTA TTTACAAGTC
ATTGAATTAC TGGAGTCTTT GAATAAGATA GATGAACAAC AAAAACAAAG TAAACTAGCA
AGTACCTACC ACCAGTTAGG AAGGGTAGCG CAAGAATTAC GGGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATCAAA ATTGAATACA GCGATCGCTA CTCTCAAGCA
AGTACCTACC ACCAGTTAGG AAGGGTAGCG CAAGAATTAC GGGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATCTTC ATTGAATACA GCGATCGCTT CTCTCAAGCA
AGTACCTACC ACAATTTAGG AATAGTAGCG CAAGAGTTAC GCGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATCTAC ATTGAATACA GCGATCGCTT CTCTCAAGCA
AGTACCTACC ACAATTTAGG AACAGTAGCG CAAGAGTTAC GCGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATCTAC ATTGAATACA GCGATCGCTT CTCTCAAGCA
AGTACCTACC ACAATTTAGG AATGGTAGCG CAACAGTTAC GCGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATCTTC ATTGAATACA GCGATCGCTT CTCTCAAGCA
AGTACCTACC ACAATTTAGG AATAGTAGCG CAACAGTTAC GGGAATGGGA AGAAGCGAGA
AACTATTACC AACAAGCTTT GTCTATTTAC ATTGAATACA GCGATCGCTA CTCTCAAGCA
CGAACCTACT ATTGTTTAGG AATGGTAGCA GAAGCAACAG GAAACCCCGA AGATGCCAAA
AATTATTACT TACAAGCGTT ACAAATATGG CTAGAATTTA ACGATCAATA CTGGGTAGAA
AATTCTATAC AAAATTTCAA GCGTTTTTAT CAAGACAACC CCGATGACAG CATTTTAGAG
GGGGTTGCGT CTATTTTTAA TACAACGGTT GAGGAGATCC GATCTGTTTT TAATAATTAA
|
|---|
| Protein sequence | MPVIIIREEQ ATESGFNALL SLNNQEYSIT VSDPFQPQEE NLLEWYFEGW LATPMLNTET
AKKAAESVNH YGLSLFEQVF KSDINAYANY CQLRQNLKDI QFEIQSKTPE FQALHWEAMK
DPELPRPFAV DCLMTRRLIK PINISINLPV FPVINLLAVV ARPDEDSDIG YRTIARPLVE
LIDQGNLRVN IEILRPGTYE SLCKHLEAKG SNYYHIIHFD LHGGLMTYQE FQKGVEKNRY
LYQRGYGLEH LDPYQGVKAF LFFEGENKGK AVPVEASELT ALLTGKNILV CILNACQSGK
QIGLDKTQER DDNKSMMGKG VALQHSNETS LSSRLMQAGM QMVVGMSYSV TVSAARLMMQ
ALYKELFNSK PITEAIRLSR LELYNNKGRQ AYFNEIIDLE DWLLPVVYNN QPVNFNLREM
TPEETEEYYT QLEQDYRFPL PVYGFVGRDL EILKIEKSLL KHNVLLLQGM GGTGKTTLLN
YLREWWYRTH YADKIFYFGY DTKAWTIDQI LFEVGRGIYN RFEFATFQAM GDAAKLGKLI
TDLRSSNHIL ILDNLESVTG QPLAIENTLD KTEQEKLKRL LQRLKGGKTK IVLGSRSDES
WLKDVYTNNN ISYLYPLQGL DSESRTELAE KILEATIPNP KKRDKVKEDD NFKRLMKLLA
GYPLAMEVVL GNLKTQTPQE ILNGLQLADV NLDRDSENKT ESILKCVEYS HSNLSPDAQK
LLLCLAPFSS FINRIVIPNY AQELQKLEPF QDYPFDQFED AISEAIHWGL LSAMLLGDPP
QPKENLLAIQ PIFPYFLKTK VKELDTATQE ALQEGFKNHY LELVNSYGSL LQSKEPQERQ
IGIFYCRLEY ENLFTGLQIC LEKQETIDIY QCLSQYLEVI NDYQSCLKLN ELVCNAVQNY
SPEAKETQLG LDIVIPFMQK GYNYLKLQQY EAAKEAYLQV IELLESLNKI DEQQKQSKLA
STYHQLGRVA QELREWEEAR NYYQQALSIK IEYSDRYSQA STYHQLGRVA QELREWEEAR
NYYQQALSIF IEYSDRFSQA STYHNLGIVA QELREWEEAR NYYQQALSIY IEYSDRFSQA
STYHNLGTVA QELREWEEAR NYYQQALSIY IEYSDRFSQA STYHNLGMVA QQLREWEEAR
NYYQQALSIF IEYSDRFSQA STYHNLGIVA QQLREWEEAR NYYQQALSIY IEYSDRYSQA
RTYYCLGMVA EATGNPEDAK NYYLQALQIW LEFNDQYWVE NSIQNFKRFY QDNPDDSILE
GVASIFNTTV EEIRSVFNN
|
|---|
| |