Gene Cyan8802_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCyan8802_0054 
Symbol 
ID8389357 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8802 
KingdomBacteria 
Replicon accessionNC_013161 
Strand
Start bp57221 
End bp58279 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content52% 
IMG OID644978102 
Productphotosystem II D2 protein (photosystem q(a) protein) 
Protein accessionYP_003135861 
Protein GI257057973 
COG category 
COG ID 
TIGRFAM ID[TIGR01152] Photosystem II, DII subunit (also called Q(A))
[TIGR01151] photosystem II, DI subunit (also called Q(B)) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.10792e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCATTG CAGTTGGACG TGCCCCGGCA CAAAGAGGAT GGTTTGATGT CCTCGATGAC 
TGGTTAAAAC GCGATCGCTT TGTATTCGTT GGTTGGTCAG GTTTATTACT CTTCCCCTGT
GCCTACTTGG CTTTAGGCGG ATGGTTAACC GGAACCACCT TTGTTACCTC CTGGTACACC
CACGGTTTGG CTAGTTCCTA CCTCGAAGGC TGTAACTTCC TCACCGTTGC CGTCTCTTCC
CCCGCTAACG CCTTCGGTCA CTCCCTTCTC TTCCTGTGGG GACCCGAAGC GCAAGGCGAC
TTCACCCGTT GGTGTCAAAT TGGCGGACTT TGGACTTTTA CCGCCCTTCA CGGTGCTTTT
GGACTGATCG GCTTCATGCT GCGTCAGTTT GAAATTGCTC GTCTGGTTGG TATTCGTCCC
TACAACGCCA TCGCCTTCTC TGCTCCCATC GCCGTGTTCG TCAGTGTTTT CCTGATGTAC
CCCTTGGGAC AGTCTGGCTG GTTCTTCGGA CCTAGCTTTG GAGTGGCGGG AATTTTCCGC
TTTATCCTGT TCTTACAAGG GTTCCACAAC TGGACACTTA ACCCCTTCCA CATGATGGGA
GTAGCGGGTG TTCTCGGTGG TGCGTTACTC TGTGCTATCC ACGGGGCAAC CGTAGAAAAC
ACCCTGTTTG AAGATAGCGA TCAAGCTAAC ACCTTCCGCG CTTTTGAACC TACCCAAGCT
GAAGAAACCT ACTCCATGGT AACGGCGAAC CGTTTCTGGT CACAGATCTT CGGGATTGCT
TTTTCCAACA AACGTTGGTT ACACTTCTTT ATGCTGTTCG TCCCTGTGAC TGGACTGTGG
ATGAGTGCGA TCGGTATTGT GGGTTTAGCC CTCAACCTCC GCGCTTACGA CTTCGTATCG
CAAGAATTAC GCGCTGCTGA AGACCCTGAA TTTGAAACCT TCTACACCAA GAATATCTTG
TTAAACGAAG GTTTACGCGC TTGGATGGCT CCCCAAGACC AACCCCACCA GAACTTTGTA
TTCCCTGAGG AGGTACTCCC CCGTGGTAAC GCTCTCTAA
 
Protein sequence
MTIAVGRAPA QRGWFDVLDD WLKRDRFVFV GWSGLLLFPC AYLALGGWLT GTTFVTSWYT 
HGLASSYLEG CNFLTVAVSS PANAFGHSLL FLWGPEAQGD FTRWCQIGGL WTFTALHGAF
GLIGFMLRQF EIARLVGIRP YNAIAFSAPI AVFVSVFLMY PLGQSGWFFG PSFGVAGIFR
FILFLQGFHN WTLNPFHMMG VAGVLGGALL CAIHGATVEN TLFEDSDQAN TFRAFEPTQA
EETYSMVTAN RFWSQIFGIA FSNKRWLHFF MLFVPVTGLW MSAIGIVGLA LNLRAYDFVS
QELRAAEDPE FETFYTKNIL LNEGLRAWMA PQDQPHQNFV FPEEVLPRGN AL