Gene Svir_39710 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_39710 
Symbol 
ID8389292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4300138 
End bp4301478 
Gene Length1341 bp 
Protein Length446 aa 
Translation table11 
GC content67% 
IMG OID644977980 
Producttranscriptional regulator with HTH domain protein and aminotransferase domain protein 
Protein accessionYP_003135739 
Protein GI257057907 
COG category[E] Amino acid transport and metabolism
[K] Transcription 
COG ID[COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTTCCT CGCAGTCTCC GCAACCGGCG CAGTATCGGC CGGGCTCTGA ACCGGCTCGG 
CAGAAGCTCG ACCCGCACAT CGACCGTTAC GCCGCCCGTA CCGCGGGCAT GACGGCATCG
GAGATCCGAG CGTTGTTCGC GGTAGCAAGC CGCCCCGAGG TCGTGTCGCT GGCCGGCGGT
ATGCCGAACC TCGCGGCCCT GCCGTTGGAC TCCTTGTCGG AGCAGATGTC GGAACTCGTC
GCCAGGGACG GGCTCGTCGC GCTCCAGTAC GGCTCCGCGC AGGGCGTCCC CGCGTTGCGG
GAGCAGATCT GCGAGGTGAT GGCCATGGAA GGCATCACCG CCCACCCGGA CGACATCGTC
GTCACCGTCG GCTCCCAGAT GGGGTTGGAC ATGGTGACAC GACTGTTCTG CGACCCAGGT
GACGTCGTCA TCGCCGAAGG ACCGTCGTAC GTCGGCGCGC TCGGCTCCTT CGCGGCCTAC
CAGGCGCAGG TCGTCCACGT CGCGATGGAC GACGACGGTC TGGTGCCCGA GGCGCTGCGT
GAGGCCCTCG CCCAGGCGAA ACAGGAGGGG AAGCGGGTCA AGCTCCTGTA CACCATTCCG
AATTTCCACA ACCCGGCGGG TGTGACGCTG TCCGTGGAGC GTCGCGCCGA GATCGTGGAG
ATCTGCGCCG AGCACGACGT GCTCATCCTC GAGGACAACC CGTACGGCCT GCTCGGCTTC
GACGGACAGA CCTACCCGTC GTTGCGTTCG ATGGCCCCGG ACAACGTCGT GTACCTGGGG
TCGTTCTCCA AGACGTTCGC CTCCGGTCTG CGCGTCGGCT GGGTGCTCGC GCCACACGCG
GTGCGGGAGA AGCTCGTATT GGCCGCCGAA TCCGCGACGC TGTGCCCACC GACTCTGAAC
CAACTGGTCG TGTCGAAGTA CCTCGCCACC CACGACTGGA AGGGGCAGAT CAAGACTTTC
CGGGAGAACT ACCGCGAACG GCGCGACGCC ATGTTGTCGG CGCTGGAACA GCACCTACCC
GAGGGGTGCA CCTGGACGCG GCCGGAGGGT GGCTTCTACG TGTGGGTCAC CGTTCCCGAA
GGCGTCGACA CCAAGGCCAT GCTGCCCCGG GCCGTGACGG CGCGGGTCGC GTACGCCTCC
GGAACCGGTT TCTACGCCGA CGGCTTGGGC AGCCGGCAGA TGCGGTTGTC CTACTGCTAT
CCCACCCCCG AACGCATCCG CGAGGGTGTT CGCCGGCTCG CCGGTGTGTT GGAGTCCGAG
ATGGAGCTCA TGCGCACCTT CGGTAGCGTC ACCAGCCGTG CGGTCTCGGG GCCTCAGTTC
CCCGGACCGG ACACCGCGTG A
 
Protein sequence
MTSSQSPQPA QYRPGSEPAR QKLDPHIDRY AARTAGMTAS EIRALFAVAS RPEVVSLAGG 
MPNLAALPLD SLSEQMSELV ARDGLVALQY GSAQGVPALR EQICEVMAME GITAHPDDIV
VTVGSQMGLD MVTRLFCDPG DVVIAEGPSY VGALGSFAAY QAQVVHVAMD DDGLVPEALR
EALAQAKQEG KRVKLLYTIP NFHNPAGVTL SVERRAEIVE ICAEHDVLIL EDNPYGLLGF
DGQTYPSLRS MAPDNVVYLG SFSKTFASGL RVGWVLAPHA VREKLVLAAE SATLCPPTLN
QLVVSKYLAT HDWKGQIKTF RENYRERRDA MLSALEQHLP EGCTWTRPEG GFYVWVTVPE
GVDTKAMLPR AVTARVAYAS GTGFYADGLG SRQMRLSYCY PTPERIREGV RRLAGVLESE
MELMRTFGSV TSRAVSGPQF PGPDTA