Gene Svir_38820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_38820 
Symbol 
ID8389203 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4202033 
End bp4202788 
Gene Length756 bp 
Protein Length251 aa 
Translation table11 
GC content65% 
IMG OID644977892 
Productamino acid ABC transporter ATP-binding protein 
Protein accessionYP_003135651 
Protein GI257057819 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1126] ABC-type polar amino acid transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGATG TGATCGTCGA GGTCTCCGAC CTGCACAAGT CCTTCGGCCA CCTGGAGGTG 
CTCAAGGGCA TCGACCTCGA AGTACGCCGC GGTGAGGTCG TGTGCATCAT CGGGCCGTCC
GGTTCGGGTA AGTCGACGCT GTTGCGGTGC GTGAACCTGT TGGAGGAGCC GAACTCCGGC
AAGGTCGTGG TCAACGGATT CGAACTGACC GATCCGGACG TCGACATCGA CCGGGCCCGG
CGCACCATCG GCATGGTGTT CCAGAGTTTC AACCTGTTCG GTCATCTGTC CGTGTTGGAC
AACCTCACCG TCGCGCAGCG CAAGGTGCTG AAGCGGGACA AGGCCGAGGC CGAACGGATC
GCGCTGGACA ACCTCGCCAA GGTGGGACTG TCGGACAAGG CCGGGGCCAT GCCCGCGCAG
CTGTCCGGTG GGCAGCAACA GCGGGTGGCC ATCGCCAGGG CGTTGTCCAT GAACCCCGCC
GTGATGCTGT TCGACGAGCC GACGTCGGCG CTCGACCCCG AACTCGTGGG CGACGTCCTC
GCGGTGATGC GGCAACTCGC CGACGAGGGC ATGACGATGC TCGTGGTCAC CCACGAGATG
CAGTTCGCCC GCGAGGTCGC CGACACGGTG CTGTTCATGG ACGGCGGAGT GGTGGTCGAG
CAGGGATCGC CGAACCAGGT GATCGGCAAC CCCCAGCAGC AACGCACCCG GACGTTCCTG
GCCCGTGTGC TCAACCCCAT CGACGCCGAC GGATAA
 
Protein sequence
MSDVIVEVSD LHKSFGHLEV LKGIDLEVRR GEVVCIIGPS GSGKSTLLRC VNLLEEPNSG 
KVVVNGFELT DPDVDIDRAR RTIGMVFQSF NLFGHLSVLD NLTVAQRKVL KRDKAEAERI
ALDNLAKVGL SDKAGAMPAQ LSGGQQQRVA IARALSMNPA VMLFDEPTSA LDPELVGDVL
AVMRQLADEG MTMLVVTHEM QFAREVADTV LFMDGGVVVE QGSPNQVIGN PQQQRTRTFL
ARVLNPIDAD G