Gene Svir_36520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_36520 
Symbol 
ID8388973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand- 
Start bp3973154 
End bp3974179 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content66% 
IMG OID644977665 
ProductABC-type dipeptide/oligopeptide/nickel transport system, permease component 
Protein accessionYP_003135431 
Protein GI257057599 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.445478 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCCGTT ACGCGTTTCG TCGAGTACTG CAACTCGTAC TCGTTCTGTT CGTTCTCTCG 
GTGCTGCTCT TCGCCTGGCT GCGGGCGCTT CCGGGAGGGC CGGTCTCGGC CCTCCTCGGC 
GACCGCGGCA CGGCGGAGAG CCGCGCTCAA TTGCGTGAGG AACTCGGGCT CGACGAGCCG 
ATCTTCGTCC AGTACTTCTC CTTCCTCGGC CGGGCGTTGA CCGGTAACTT CGGCAACTCC 
ATCGGGGTCG CCCCGGGCAT GCCCGCCCTG GAGGTGTTCT CGGAGCGGTT CCCGGCCACG 
ATCGAACTCA GCTTCATGGC CATCGTCCTC GCGCTGATCA CGGCGATCCC CCTCGGCTAC 
CTGGCCGCCC GCCGTCGCGG CGGCTGGCTG GACAACGCGG GCATCCTCAG CTCGCTGGTG 
GGGATCTCCG TGCCGATCTT CTTCTTCGCG TTCCTGCTGA AGTGGATCTT CGCGATCGAG 
CTCGGCTGGC TGCCCACGGG CGGTAGGCAG ACCGTCGGCA TCGACGCCAC CCGGGTCACC 
GGGTTCTTCG TGCTCGACGG CATCCTCACC CAGGAATGGG ACGCCGCCTG GGACGCGCTG 
GTGCATCTGC TCCTGCCCTC GATCGCACTG GCATCGATCC CGTTCGCGGT CATCTTCCGC 
ATCACGCGGG CTTCGGTGCT GGACGTGTTG GACGAGGACT ACGTGCGCAC GGCGCGCTCC 
AAGGGGCTGG CCAAGCGCGT GATCCGCGAC CGGCACATCC TGCGCAACTC GTTGCTGCCC 
GTGGTGACGA CCGTGGGGTT GCAAACGGGT TCGCTGCTGT CGGGAGCGGT GCTCACCGAA 
ACCGTGTTCG CCTGGCACGG CATCGGAGAA GCGCTCGCAC TCGGCTTCGA ACGCAAGGAC 
TTCCCCGTGC TTCAAGTGGT CATCATCGCC GGGGCGGCGT CGTACGTACT GATCAACCTC 
TTGGTCGACC TGTCGTACGC GCTGATCGAC CCGCGCATCC GTACGGCGCA GAAAGTGGGG 
TCGTAA
 
Protein sequence
MLRYAFRRVL QLVLVLFVLS VLLFAWLRAL PGGPVSALLG DRGTAESRAQ LREELGLDEP 
IFVQYFSFLG RALTGNFGNS IGVAPGMPAL EVFSERFPAT IELSFMAIVL ALITAIPLGY 
LAARRRGGWL DNAGILSSLV GISVPIFFFA FLLKWIFAIE LGWLPTGGRQ TVGIDATRVT 
GFFVLDGILT QEWDAAWDAL VHLLLPSIAL ASIPFAVIFR ITRASVLDVL DEDYVRTARS 
KGLAKRVIRD RHILRNSLLP VVTTVGLQTG SLLSGAVLTE TVFAWHGIGE ALALGFERKD 
FPVLQVVIIA GAASYVLINL LVDLSYALID PRIRTAQKVG S