Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_36080 |
Symbol | |
ID | 8388929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3932806 |
End bp | 3933990 |
Gene Length | 1185 bp |
Protein Length | 394 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644977623 |
Product | trypsin-like serine protease with C-terminal PDZ domain protein |
Protein accession | YP_003135390 |
Protein GI | 257057558 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.48254 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.498505 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACTGGG TCGACCTACT GGTGATCCTG CTGGCCCTGC TCGCTGCCGT CTCCGGTGCC CGTCAGGGGT TCGTCGTCGC GTTGCCCGCC TTCCTCGGGG TGATCGTCGG CGCGGTACTG GGAATCCGAA TCGCCCCGTT CATCGTCGAG GAGGTCGACC ATCCCACCGC CAAGGTGGCG TTCGCGGTCG GCACGGTGAT CTTCCTCGTC GCGCTCGGCG AGACCGTCGG CGTGTATCTC GGGAACAAGC TCAAACGCAG GATCTCGTCA TCCAAGTTGT CCGGTGTGGA CAATGCGCTG GGTGCCGTCG TGCAAGGCGC CGTGGTGTTC GTGGTCGCTT GGCTCATCGC CCTGCCGTTG ACCAGCGTCG CCGCTCTGCC CGGACTGACC AAGGCGATCA ACGAGTCGTC CGTGCTGGGT GGGGTCAACG ACCTGATGCC CGAGGCGGCT CAGGGCCTGC CGGGGGAACT GCGCAATCTG CTCGACGAAT CCGGCTTCCC GTCGATCCTG GCACCGTTCC AGGAAGCTCC GGTGCGCCAG ATCAACCCGC CCGACCCGGC GTTGCAGAAC AGTGCCGTGG TCCAGAACGT GCGGCCGAGT GTGCTGAAGG TACGCGGCAC CGCGCCGAGC TGTTCCCGAT CCCTGGAGGG CACGGGGTTC GTCATCGACG AAGAACGGGT GATGACCAAC GCGCACGTCG TCGCGGGTAC CGAACAGGTC CTGGTGGAGA CGACACGGGG TCACTTGGAA GCCGAGGTCG TGCACTACGA CCCCGCCACC GACGTCGCCG TGCTCGCCGT CCCCGGGCTC GACGAGAAGC CACTGCCGTT GGCGGAGGAG CCGGCCGAGG CGGGCGACGA CACGATCGCG CTTGGCTACC CCCTCGACGG ACCGTACACC GCCACACCGA CGCGGATCCG GGAGCGGATC ACCTTACGCG GACCGGACAT CTACGACTCG CGAACCGTGC AGCGCGACGT CTACACCGTT CGGGGGCAGG TGCGCAGCGG TAACTCGGGT GGTCCCCTGA TCGACCCGGA CGGCCGTGTC GTCGGTGTCG TGTTCGGTGC CGCGGTGGAG GACCCCGACA CCGGGTTCGT GCTCACGGCC GACGAGGTGA GCGACGAGAT CGAACAGGCC CGCTTCCTGA CGGCCGCGGT CGACACGGGG CCCTGCACGG GTTGA
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Protein sequence | MNWVDLLVIL LALLAAVSGA RQGFVVALPA FLGVIVGAVL GIRIAPFIVE EVDHPTAKVA FAVGTVIFLV ALGETVGVYL GNKLKRRISS SKLSGVDNAL GAVVQGAVVF VVAWLIALPL TSVAALPGLT KAINESSVLG GVNDLMPEAA QGLPGELRNL LDESGFPSIL APFQEAPVRQ INPPDPALQN SAVVQNVRPS VLKVRGTAPS CSRSLEGTGF VIDEERVMTN AHVVAGTEQV LVETTRGHLE AEVVHYDPAT DVAVLAVPGL DEKPLPLAEE PAEAGDDTIA LGYPLDGPYT ATPTRIRERI TLRGPDIYDS RTVQRDVYTV RGQVRSGNSG GPLIDPDGRV VGVVFGAAVE DPDTGFVLTA DEVSDEIEQA RFLTAAVDTG PCTG
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