| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35650 |
|---|
| Symbol | |
|---|
| ID | 8388886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 3882047 |
|---|
| End bp | 3884443 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644977580 |
|---|
| Product | membrane protease FtsH catalytic subunit |
|---|
| Protein accession | YP_003135348 |
|---|
| Protein GI | 257057516 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0465] ATP-dependent Zn proteases |
|---|
| TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.399414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCGCA AGCGCCTGTT GAAGAACCCA CTGCTGTGGA TACTCGTGGC TTTGGTGCTG
TACTTCGGTA TCAGCACCCT CACAGACGGT ACCCGAGGCT ATACCGAGGT GCCGACGTCG
CAGGCCATCG AGCAGATCCG CTCCGGCAAC GTCGACGAAG CCACTCTGGA GGACCGGGAA
CAGCAGCTCA AGCTGCAGCT GTCCGAACCC ATCGAGGTCG AGGGCGAGCA AGTAGAACAG
GTCATCACGA AGTTCCCGGC GGGAGCGTCC GACCAGCTCT ACAACACGCT GATCAACGCG
GGCACGGGTG AGCAGAACGT CAGGTTCGAC ACCACTGTCA GCCAGGACAA CTTCTTCACC
CAGCTGCTGA TCTACATGAT CCCGCTGGGC ATCCTCGTGC TGCTGCTCAT GTGGATGATG
AACAGCGCGC AGGGCGGCGG TAACAGGGTG CTCAACTTCG GCAAGGCCAA GGCCAAGCAG
TTGAGCAAGG ACATGCCGAC GACGACCTTC AAGGACGTCG CGGGTGCCGA CGAGGCCGTC
GAGGAACTGC AGGAGATCAA GGACTTCCTG CAGAACCCGG CGCGCTACCA GGCTTTGGGC
GCGAAGATCC CGAAGGGCGT GTTGCTGTAC GGCCCGCCCG GTACCGGTAA GACGCTGCTC
GCGCGTGCGG TCGCCGGTGA GGCGGGGGTG CCGTTCTACA CGATCTCCGG TTCCGACTTC
GTCGAGATGT TCGTCGGTGT CGGTGCGTCC CGAGTACGTG ACCTGTTCGA ACAGGCCAAG
CAGAACGCGC CGTGCATCAT CTTCGTCGAC GAGATCGACG CCGTGGGTCG GCAGCGTGGC
GCGGGCCTCG GTGGGGGCCA CGACGAACGT GAGCAGACGC TGAACCAGCT GCTCGTCGAG
ATGGACGGCT TCGACTCGCG CGGCGGCATC ATCCTGATCG CGGCCACGAA CCGTCCCGAC
ATCCTCGACC CGGCTCTGCT GCGTCCCGGC CGGTTCGACC GGCAGATCCC GGTGTCGGCC
CCCGACCTCG TGGGTCGGAG GCGGATCCTG GAGGTGCACT CCAAGGGCAA GCCGTTGGCC
GACAACGTCG ACCTGGAGGC GCTGGCCAAG CGCACGGTGG GCATGTCGGG CGCCGACCTC
GCCAACGTCA TCAACGAGGC GGCCCTGCTC ACGGCGCGGC AGAACGGCAC CGTCATCACC
GAGGCGGCGC TGGAGGAGTC GGTCGACAGA GTGATCGGCG GGCCTGCCCG CAAGAGCCGC
ATCATCTCCG AGCACGAGAA GAAGATCACC GCTTACCACG AGGGTGGACA CGCGCTCGCG
GCGTGGGCGA TGCCGGACAT CGAGCCTGTC TACAAGCTGA CGATCCTCCC CCGGGGCCGT
ACCGGTGGGC ACGCGCTGAT CGTCCCCGAG GACGACAAGC AGCTGATGAC CCGGTCGGAG
ATGATCGGTC GACTCGTCTT CGCGATGGGT GGTCGTGCGG CCGAGGAGCT GGTGTTCCAC
GAGCCCACCA CCGGTGCGTC CTCAGACATC GAGCAGGCGA CCAAGATCGC CAGGGCGATG
GTGACCGAGT ACGGTATGTC GTCGCGTCTC GGTGCGGTCA AGTACGGCCA GGACCAGGGT
GACCCCTTCC TGGGGCGCTC GGCGGGCCGG CAACCGGACT ACTCGCTCGA GGTCGCGCAC
GAGATCGACG AGGAGGTGCG CAAGCTCATC GAGACGGCGC ACACCGAGGC GTGGGAGGTG
CTCAGCACCT ACCGCGACGT GCTCGACGAT CTCGTGATGG AGGTGCTGGA GAAGGAGACG
CTCCAGCGCA AGGACCTGGA ACGCATCTTC GCCTCGGTGA AGAAGCGGCC GCGGATCACG
GTGTTCAACG AGTTCGGGGA GCGCCTGCCG TCGGACAAGC CGCCGATCAA GACGCCGCGT
GAGCTGGCGT TGGAGCGGGG CGAGCCGTGG CCTCCGGAGA CGGACGACGA GAACAAGTCC
GACTCCGACA AGGCGGAGGC GCCGGAGGAA CCGCAACCGA CCCCGGTGCG GACCGCGCCC
GGCGGCGGCG ATCTGCCCGG CGGTCCACCG CACCAGCAGC CCGAACCTCC CACGATGTCG
CCGACGTACA ATCCGTACGC TCCACCTTCC GGTGACACCG GTTCCAACGG AGCCCACAAA
GGCAGCGGTG CCACCCCGTG GACCTCGTAC GGGGATCGTC CGAGCACCGG TGCCAGCAAC
CCGGGACCGC CTCACTACGG GGCTCCCCCG GGATGGACTC CGGCGACGCA GCCGCGAGGC
GATCATGGCT ACCCGTGGCG TGACCAGCCG CCCTTACAAC CGGGGCAACC GTCACCGTCC
GCGGAAGGAC AATCCCAAAC CGAGCGCAAT GACAACAACG ATCAGGACGG CAAATAG
|
|---|
| Protein sequence | MDRKRLLKNP LLWILVALVL YFGISTLTDG TRGYTEVPTS QAIEQIRSGN VDEATLEDRE
QQLKLQLSEP IEVEGEQVEQ VITKFPAGAS DQLYNTLINA GTGEQNVRFD TTVSQDNFFT
QLLIYMIPLG ILVLLLMWMM NSAQGGGNRV LNFGKAKAKQ LSKDMPTTTF KDVAGADEAV
EELQEIKDFL QNPARYQALG AKIPKGVLLY GPPGTGKTLL ARAVAGEAGV PFYTISGSDF
VEMFVGVGAS RVRDLFEQAK QNAPCIIFVD EIDAVGRQRG AGLGGGHDER EQTLNQLLVE
MDGFDSRGGI ILIAATNRPD ILDPALLRPG RFDRQIPVSA PDLVGRRRIL EVHSKGKPLA
DNVDLEALAK RTVGMSGADL ANVINEAALL TARQNGTVIT EAALEESVDR VIGGPARKSR
IISEHEKKIT AYHEGGHALA AWAMPDIEPV YKLTILPRGR TGGHALIVPE DDKQLMTRSE
MIGRLVFAMG GRAAEELVFH EPTTGASSDI EQATKIARAM VTEYGMSSRL GAVKYGQDQG
DPFLGRSAGR QPDYSLEVAH EIDEEVRKLI ETAHTEAWEV LSTYRDVLDD LVMEVLEKET
LQRKDLERIF ASVKKRPRIT VFNEFGERLP SDKPPIKTPR ELALERGEPW PPETDDENKS
DSDKAEAPEE PQPTPVRTAP GGGDLPGGPP HQQPEPPTMS PTYNPYAPPS GDTGSNGAHK
GSGATPWTSY GDRPSTGASN PGPPHYGAPP GWTPATQPRG DHGYPWRDQP PLQPGQPSPS
AEGQSQTERN DNNDQDGK
|
|---|
| |