| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_35090 |
|---|
| Symbol | |
|---|
| ID | 8388831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3813567 |
|---|
| End bp | 3814058 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644977529 |
|---|
| Product | transcriptional regulator, CarD family |
|---|
| Protein accession | YP_003135297 |
|---|
| Protein GI | 257057465 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1329] Transcriptional regulators, similar to M. xanthus CarD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.86286 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTCA AGGTCGGAGA GACCGTCGTC TACCCGCACC ACGGTGCCGC ACTCATCGAA
GCGATCGAAA CACGCGTGAT CAAAGGCGAG GAGAAGCAGT ACCTCGTCCT GAAGGTCGCG
CAGGGTGATC TTACGGTTCG CGTCCCCGCA GATAACGCTG AGATCGTCGG CGTGCGCGAC
GTAGTGGGTC AGGAGGGTCT GAACCGGGTC TTCGACGTGT TGCGAGCGCC ACACACCGAC
GAGCCGACCA ACTGGTCTCG CCGGTACAAG GCCAACCTGG AGAAGCTCGC CTCCGGCGAT
GTCAACAAGG TGGCCGAAGT GGTGCGCGAC CTGTGGCGTC GGGAGAAAGA CCGTGGCCTT
TCCGCTGGTG AGAAGCGGAT GCTGGCCAAG GCGCGGCAGA TTTTGGTCAG CGAGCTCGCT
CTCGCCGAGG GCACCGACGA AAGCAAGGCC GAGGTCTTGC TCGACGAGGT GCTGGAAACC
GCGGTGGTCT AG
|
|---|
| Protein sequence | MVFKVGETVV YPHHGAALIE AIETRVIKGE EKQYLVLKVA QGDLTVRVPA DNAEIVGVRD
VVGQEGLNRV FDVLRAPHTD EPTNWSRRYK ANLEKLASGD VNKVAEVVRD LWRREKDRGL
SAGEKRMLAK ARQILVSELA LAEGTDESKA EVLLDEVLET AVV
|
|---|
| |