Gene Svir_34940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_34940 
Symbol 
ID8388816 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3795364 
End bp3796977 
Gene Length1614 bp 
Protein Length537 aa 
Translation table11 
GC content67% 
IMG OID644977514 
Productfused histidine kinase with GAF domain/SpoIIE-like protein 
Protein accessionYP_003135283 
Protein GI257057451 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.24735 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.897834 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACGGG CGGTCGACAC CCACCACACC GAAGACCGTC TGCGTCGGTT CGAGGCGATC 
GCCGACACAG GACTGGCTCA TCTGCGCGAG GAAGACGTGC TCAAGGAGTT GCTGGACAGG
GTCCGGGACG TGCTCGAAGC CGACACAGCG ACGGTCCTCC TGCTCGACAA CACCGGACAG
CAGCTTGTCG CCGCCGCCTC CTCCGGTCTG GAGGAGGAGG TGCGACAGGG TGTGCGGGTG
CGTGTGGGTG AGGGCTTCGC CGGTCGGGTC GCCACCGAGC TGAAACCGTA CGCCATCGAG
GACGTCAACT CCGAGACCGT CGTGAACCCT CTGCTGTGGC GGAAGGGACT GCGGGGACTC
GTCGGTGTCC CACTGCTCGC GGAAGGTGAG TTGCTGGGCA TCCTGCACGT CGGCACCCTG
CGCAAACGGG TCTTCGACGA CGAGGAGATC CACTGGCTGC ACCTGGTCGC CGACCGAATC
GCGGTCAGCC TGCGCAGCCA GTTGACGTCC AGCGACCGGA ACGCGGCCGC GACGCTGCAA
CGGTCGTTGC TGCCCGTGCA GCTACCGTCC ATCTCCGGAC TCGACCTGGC CTCTCGATAC
GTGCCGGGAG AACGCCTCGG CACCAGCGGT GATTGGTACG ACGTGTTCAC CCTGCCCTCA
GGGCGGGTGT GCATGGTGAT CGGGGACGTG GTGGGGCGTG GCCTGTCCGC CGCCATGATC
ATGGGTCGCC TCCGCACGAT CCTCCGGGCG TCCTCCCTCG ACCGTGAGGA CCCCAGTGAG
ATCCTGACGA AACTCGACCG ATACGCCCGC CACTTCGAAT CCGACATCAT GGCGACGATC
GCCTGCGGCG TGTGGGAACC GTCGCTGGAA CGGGTCCACC TGTCGCTGGC GGGACATCTC
ACCCCGGTGT TCGCCCCCGT GGGGGAGGAG AGCCGCTTGG TGACCGAGGT GCCCGTCGAC
GCGCCCATCG GGGTCAGTTC GACGACGCAG AAGCGACACA CGGTCACGGT GGAGGTGCCC
TACGGAGCGG CTCTGCTCTT CTACACCGAC GGACTCGTGG AACGACGGGA CCGCCCATTG
GACGACGGTC TGCGTCAGCT GTGCGAAACC GTCCGCGCCG GCCCGGCAGA GACATTGTGC
GCGGAAGTGA TGAGCAAACT GGTGGGAGTC AATTCCCCCA GTGACGACAT CGCCATCCTG
GCGGCTCATC GGCAAGCTCC CGAAACACCC TCCGAGTTGC GGTTCGAGGT CGACGCCACG
CCCGAATCAC TGGCCGAGGT GCGTTCGCAG CTGAGGCGCT GGTTGCCGAA CGTGGGGGCA
TCCGAGGACG ACACGGCGGA CCTGCTCATC GCCGTGGGTG AGGCCGTGGC CAACTCGATC
GAACACGCTT ACGGCCCCCA CGGCGGTAAG GTCGCCCTGG GGCTTGAGGT GCACGACGCG
GAAGTGGAGA TCACCGTAAG CGACACGGGC ACGTGGCGCT CGCCCAGGGG CACCCATCGC
GGGAGGGGAA TGCAGCTCAT GCGGCAACTC TGTGACGAGC TCACCGTGGA GCACGACGAG
ACGGGCACCC ACGTCCGGCT GCGCAAACGA TTCTCGGAGG ATGAGTCCGC ATGA
 
Protein sequence
MPRAVDTHHT EDRLRRFEAI ADTGLAHLRE EDVLKELLDR VRDVLEADTA TVLLLDNTGQ 
QLVAAASSGL EEEVRQGVRV RVGEGFAGRV ATELKPYAIE DVNSETVVNP LLWRKGLRGL
VGVPLLAEGE LLGILHVGTL RKRVFDDEEI HWLHLVADRI AVSLRSQLTS SDRNAAATLQ
RSLLPVQLPS ISGLDLASRY VPGERLGTSG DWYDVFTLPS GRVCMVIGDV VGRGLSAAMI
MGRLRTILRA SSLDREDPSE ILTKLDRYAR HFESDIMATI ACGVWEPSLE RVHLSLAGHL
TPVFAPVGEE SRLVTEVPVD APIGVSSTTQ KRHTVTVEVP YGAALLFYTD GLVERRDRPL
DDGLRQLCET VRAGPAETLC AEVMSKLVGV NSPSDDIAIL AAHRQAPETP SELRFEVDAT
PESLAEVRSQ LRRWLPNVGA SEDDTADLLI AVGEAVANSI EHAYGPHGGK VALGLEVHDA
EVEITVSDTG TWRSPRGTHR GRGMQLMRQL CDELTVEHDE TGTHVRLRKR FSEDESA