| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_34920 |
|---|
| Symbol | |
|---|
| ID | 8388814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 3792932 |
|---|
| End bp | 3794365 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644977512 |
|---|
| Product | DNA ligase D/DNA polymerase LigD |
|---|
| Protein accession | YP_003135281 |
|---|
| Protein GI | 257057449 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.140848 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.164362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCCGC GACTCGAGCA GTACCGGAAC AAGCGGAGGA AAGGACACAC CCCCGAACCG
ATACCCAGCG TAACTCTCGC GTCGACGGAG GGCCACGGCG ACACGTTCGT CGTGCACGAG
CATCATGCCC GCAATCTGCA CTGGGACGTG CGCCTCGAGC GCGACGGCAG GCTGATCTCG
TTCGCGGTAC CGAAGGGACT TCCCACTGAA CCGGGCACAG TGCGACTCGC CGTGCGCACC
GAGGACCATC CGCTGGAGTA CTCGACGTTC TCCGGAGAGA TCCCGAAAGG CGAGTACGGC
GGCGGACACA TGTCGATCTG GGACCGAGGT ACCTATGAGA CTCTCAAGTG GGGCGAGAGC
AAGGTCTCGA TCGTCCTGCA CGGTGAACGG GTGCACGGCA AGTACGTGTT CTTCCGCACC
CGGGAAAGTG ATTGGAGCGT CGTACGTTCC GATCCACCAG ACGATCCAGA GTGGACCCCA
ATTCCCTCCC TCCTCAAACC CATGCTCGCC GTGACGGGCT CCCTGCCCGA CCCCGAGGAG
GACTCCGACT GGGCATACGA GTTCAAATGG GACGGTGTAC GCGCCCTCGC CCGGGTCGAA
GGGGGGAGAG TCACGCTGTT CTCCCGGCGA GGCGACGACA TCACCGGGAT CTATCCGGAA
TTGCGTGCGC TCGGCGAGGA TTTGGGAAGC ACCCAGGCTT GGCTGGACGG TGAGATCGTG
GCGTTCCGAG ACGGCAGACC ACACTTCGCC ACCCTGCAAG GCCGCATCAA CGCGGGAGCG
CAGAAGGCCC GGAGGTTGTC CCAGCGCTCC CCGGTCACGT ATCTCGTGTT CGACCTGCTG
CACCTCGACG GCCATTCCTG CATGGGACTG CCCTACTGGC AGCGGAGGAA CCTGCTGGAG
CAGCTCGACA TCACGGGTGA ACATTGGCGA ACCCCTCCCA GCTTCCCCGG GGCCGGTCGA
GCGGTCACGG AGGCCGCTGC CGAACAACGA CTGGAAGGGG TCGTCGCCAA GCGCCTCGAC
TCCCCCTACC GCCCCGGGGA ACGCAGCGTC GACTGGCGCA AGATCACCGA ACTGCGGACG
TTGGAGGTGG TCATCGGCGG CTGGCGGCAA GGCCGGGGAA GACGCTCCGA CACCTTCGGC
TCGCTCCTGC TGGGCATCCC TAACGACGGT CGGCTTCAGT ACATCGGCCA GGTCGGAACC
GGATTCGACG AGGACGCCCT GCACGCCCTC ACCTCCAGAC TGCACCGGCT GGAACGCCGG
ACCTCGCCGT TCTCCGAAGC CTTACCGAAA GACCGGACGA GCGGAGCTCA CTGGGTCAGT
CCGCGACTCG TGGGCGAGGT CGCGTTCAAG TCGTGGACCG ACGACGGCCG ACTGCGCGCA
CCGACGTGGC GGGGGCTGCG CCCCGACCGC GATCCGGAGG AGTTGGCGCG ATGA
|
|---|
| Protein sequence | MAPRLEQYRN KRRKGHTPEP IPSVTLASTE GHGDTFVVHE HHARNLHWDV RLERDGRLIS
FAVPKGLPTE PGTVRLAVRT EDHPLEYSTF SGEIPKGEYG GGHMSIWDRG TYETLKWGES
KVSIVLHGER VHGKYVFFRT RESDWSVVRS DPPDDPEWTP IPSLLKPMLA VTGSLPDPEE
DSDWAYEFKW DGVRALARVE GGRVTLFSRR GDDITGIYPE LRALGEDLGS TQAWLDGEIV
AFRDGRPHFA TLQGRINAGA QKARRLSQRS PVTYLVFDLL HLDGHSCMGL PYWQRRNLLE
QLDITGEHWR TPPSFPGAGR AVTEAAAEQR LEGVVAKRLD SPYRPGERSV DWRKITELRT
LEVVIGGWRQ GRGRRSDTFG SLLLGIPNDG RLQYIGQVGT GFDEDALHAL TSRLHRLERR
TSPFSEALPK DRTSGAHWVS PRLVGEVAFK SWTDDGRLRA PTWRGLRPDR DPEELAR
|
|---|
| |