Gene Svir_34360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_34360 
Symbol 
ID8388760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp3740891 
End bp3742537 
Gene Length1647 bp 
Protein Length548 aa 
Translation table11 
GC content68% 
IMG OID644977458 
ProductDNA/RNA helicase, superfamily II 
Protein accessionYP_003135227 
Protein GI257057395 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1061] DNA or RNA helicases of superfamily II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTGATG GCCCTCTGAT CGTCCAGTCG GATAAAACGG TGCTGCTCGA GGTCGACCAC 
GAGCTCGCCG AGGACGCGCG CATCGCCATC GCGCCGTTCG CCGAACTCGA ACGCGCCCCC
GAACACGTCC ACACTTACCG GGTGACCCCG CTGGCGCTGT GGAACGCGCG CGCGGCCGGA
CACGATGCCG AGCAGGTCGT CGATGCCCTG ACCAGGTACT CCCGTTTCCC CGTGCCGCAG
CCGTTGCTCA TCGACATCGT CGACACGATG GGCCGGTTCG GCAGGCTGCA GATCCACAAC
CACCCGGCAC ACGGCCTGGT GATGACCACC ACCGACCGCG CGGTGCTGGA AGAGGTCCTG
CGGAACAAGA AGATCAGCCC GATGCTGGGC ACCCGCATCG ACCCGGACAC CGTCGTGGTG
TACCCGTCCG AGCGGGGACG TCTGAAGCAG GCGCTGCTGA AAGTCGGCTG GCCCGCCGAG
GACCTCGCGG GGTACGTGGA CGGCGAATCC CACCCGATCG CGCTGGAGGA GAACGGCTGG
GCACTGCGTG ACTACCAACG CCAGGCGGCG GACGCGTTCT GGGCGGGAGG CTCCGGCGTC
GTCGTGCTGC CCTGCGGCGC GGGTAAGACC CTGGTCGGCG CGGCCGCGAT GGCGCAGGCG
CAGGCCACCA CGCTCATCCT CGTCACCAAC ACGGTCGCGG GCAGGCAGTG GAAACGCGAA
CTCGTGGAGC GCACCTCGCT CACCGAGGAC GAGATCGGCG AGTACTCGGG CGAGAAGAAG
GAGATCCGCC CCGTCACCAT CGCCACGTAC CAGGTCATCA CCCGCCGTAG CAAAGGCGAG
TACAAGCACC TCGAGTTGTT CGACTCCCGT GACTGGGGAT TGATCATCTA CGACGAGGTG
CATCTGCTGC CCGCCCCGGT GTTCCGGATG ACGGCTGACC TCCAGTCCCG GAGGCGGCTC
GGCCTCACCG CGACACTGGT GCGGGAGGAC GGGCGTGAGG GTGACGTGTT CTCCCTGATC
GGCCCGAAAC GTTACGACGT CCCCTGGCGC GACATCGAGG CCCAGGGCTG GATCGCCCCC
GCCGAATGCG TCGAGGTCCG AGTGACCCTC ACCGACGCCG AACGCCTCGC CTACGCCACC
GCCGACAGCG AGGAGCGCTA CCGGCTCGCC TCCACCGCGC GCACCAAGAA CAAGGTCATC
TCCTCGATCG TGGACAAGCA CGCGGGCGAA CCCACCCTCG TCATCGGTGC CTATCTCGAT
CAGTTGGAGG AGCTCGGCGC CGAACTCGAC GCCCCGGTCG TGCAGGGGTC CACGAGGAAC
AAGGAACGCG AGGCGCTGTT CGACGCCTTC CGCAGGGGTG AGATCGACAA GCTCGTGGTG
TCCAAGGTCG CGAACTTCTC CATCGACCTG CCGGAGGCGT CGGTGGCCAT CCAGGTGTCG
GGCACCTTCG GCTCCCGACA GGAGGAGGCC CAGCGGCTCG GCAGGTTGCT GCGACCCAAA
AGCGACGGGC GGCAGGCACA CTTCTACTCC GTCGTCGCCC GCGACACCGT GGACACCGAG
TACGCCGCCC ACCGGCAACG GTTCCTCGCC GAACAGGGCT ACGCCTACCA CATCGTCGAC
GCCGACGACC TGCTCCGGCC GCTGTGA
 
Protein sequence
MTDGPLIVQS DKTVLLEVDH ELAEDARIAI APFAELERAP EHVHTYRVTP LALWNARAAG 
HDAEQVVDAL TRYSRFPVPQ PLLIDIVDTM GRFGRLQIHN HPAHGLVMTT TDRAVLEEVL
RNKKISPMLG TRIDPDTVVV YPSERGRLKQ ALLKVGWPAE DLAGYVDGES HPIALEENGW
ALRDYQRQAA DAFWAGGSGV VVLPCGAGKT LVGAAAMAQA QATTLILVTN TVAGRQWKRE
LVERTSLTED EIGEYSGEKK EIRPVTIATY QVITRRSKGE YKHLELFDSR DWGLIIYDEV
HLLPAPVFRM TADLQSRRRL GLTATLVRED GREGDVFSLI GPKRYDVPWR DIEAQGWIAP
AECVEVRVTL TDAERLAYAT ADSEERYRLA STARTKNKVI SSIVDKHAGE PTLVIGAYLD
QLEELGAELD APVVQGSTRN KEREALFDAF RRGEIDKLVV SKVANFSIDL PEASVAIQVS
GTFGSRQEEA QRLGRLLRPK SDGRQAHFYS VVARDTVDTE YAAHRQRFLA EQGYAYHIVD
ADDLLRPL