| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_33070 |
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| Symbol | |
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| ID | 8388631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3588012 |
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| End bp | 3591434 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644977330 |
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| Product | Rhs family protein |
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| Protein accession | YP_003135099 |
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| Protein GI | 257057267 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01445] intein N-terminal splicing region
[TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCCAC GGCGAGTCCA GCGGTGGGAC GGCGAGCAGT ACCAGGTGTC CGTCGAAACC
ACCTACGACG CCTACGGTCG GATCACCTCC CGCACCGACG CCGCGACGGT GGTCACCACC
CACTCGCTCC GACAGGACGG CGGATACAAC ACCTCCTACA CCTTCTACGA CGGTTTCCTC
CGCGAACGTC AGAGCCAACT TCCGGCCGCC GGGGACAACA AGGAGATCCC TCCTGACCCC
CGCGACGACG AGGGCTCCGC AGGCTCTCCC CGCGGACGGA TCGTCACCGA CACGTGGTAC
GACTCGCGCG GCCTGGTGTG GAAGGTCAAC GACGCCTACT TCAACAACGA GGCACCCAGC
GATGTCCTGT TGGGGGTGGG TGACGAGGCG GTACCCCACC AGACGATCAC CGAGTTCGAC
GCCTTGGAAC GGCCGACCGC GATGATCTTC CGCAAGCTCG GTGAGGAGCA GTGGCGTACC
ACCAACACCT ACGGAGGCGA CCGGGTACAC ATCGATCCAC CGGACGGGGA CACGCCGGTC
ACGGTGATCC GCAACGCCCA GGGCGAGATG GTCGAGCGTC GGCAGTACCA CGGTGACGAG
CCCAGCGGTG AGTTCGACGC CACGACCTAC ACCTACACCC CACGTGGTGA GTTGAAGTCG
GTCACCGATC CCGCGGGCAA CACATGGTCC TACGACTACG ACGTGTTGGG TCGCAAGATC
TCCTCACACG ACCCGGATAG CGGTACCACG ACGTACGTCT ACGACGAGCT CGACCAGTTG
GTCTCCACGA CCGACGAGCG CGGGAGGACG CTGGCCTACA CCTACGACGA GTTGGGGCGC
CGGACCGCGA TGTTCGAGGG CGGTCCGGAC GGTACAAAGA TCGCGGAGTG GACCTACGAC
ACCCTGAAGA AGGGGTTGCC CACGGCCTCG ACCCGGTTCG TCGACGGACA CGCCTACACC
ACCAAGGTCG CCAGTTACGA CGAGCAGAAC CGGGTCACCA GTGAACAGGT GGTCATCCCC
GAGGTCGAGG ACGAACTCGC GCGCACGTAC ACCTTCCGCA CCAGGTACTT CCCGAACTCC
GACCTGGTGG AGGCGTACTC GATGCCGGCG GCGGGGGGTC TGGATTCCGA GGCGATCGGC
TACGAGTACA ACGAACTGGG TTTACCGACC GAGACCTACG GCTGGGACAC CTACGCCCAG
GAGCACCTGT ACTCGCCGTA TGGGGAGACG CTGCGGCTGA CGATCGGTGA AGGTGGTCAG
CGGGCGTGGG TGACGAACTA CTTCACTGAG GGCACGCGCC GGCTCGACCA GACCATCCTG
GACCGGAACA CCGAGACGGG TTACCGGGTC GCGGATCGGC ATTACTCGTA CGACCCGGCG
GGCAACATCA CGCGCATCGC GAATGCACCG AAGGACGGGC CACAGGATGT GCAGTGTTTC
GCCTACGACT ACTTGCGGAG GTTGACGTCG GCGCATACGC CCGCCTCGGA TGACTGTCAG
GCGGAACCGG CTGTCACGGG TCTTGGTGGG GTGGCTCCGT ATTGGGTGGA GTTCGCCTAC
GACGAGTCCG GTAACCGGTT GTCGGAGGTC TGGCATGAGG TCGAGGGGGA CACGACTCGG
ACCTACGAGT ATCCGTCGGC GGGGCAGGCG CAGCCGCACA CGTTGACGGC GGTCACGCAG
GTCGGTCCTG GTGGGACGTC GCGGGACGAG TTCGCCTATG ACGCGGTGGG TAACACGGTG
TCGCGCACGG TGTCCGGGGA CACCCAGTTG TTGGAGTGGA ACGCCGAGAG CCGTGTGGAG
CGGGTGGAGT ATGCGGACGG GTCTCAGAGT TCGTATGTGT ACGACGCGGA CGGTAATCGT
CTGCTGACGA AGGATCCGAA GCGGACGGTG TTGTTCCTGC CGGGGATGGA ACTGACGCTG
GACGTCGAGT CGGGTGAGGT CACGGCCAAG CGTTTCTACG AGCACGCGGG CACGACGGTG
GCGGTGCGGT CGTCGGTCGG CGGGCTGACG ATGCTGTTCG GCGATCACCA GGGCACGGCG
ACGGAGTCGA TCGAATCCGA GCCGGAATTG TCGGTGTCAC GGCGATACTT CACACCGTTC
GGCGCTCCGC GGGGCGAGCG TCCGGAGTCG TGGCCGACGG ATCACGGGTT CGTCGGTGGA
ACCCGTGATG TGTCGGGTTT GACGCATCTG GGGGCGCGGG AGTACGACCC GACGCTGGGG
CGGTTCATCT CGGTGGATCC GATCATGGAT TTGACGGATC CGCAGCAGAT GCACGGGTAT
GCGTATTCGA ACAACTCGCC GGTGACGTTC AGTGATCCGT CGGGGTTGTT GATGGGGGCG
GCGTGTGGTC CGGACGGGAT TCTGTGTGGC AGGCCGGCCG GGATGGATCG CCGGGACTAC
ATCGAGACGC GGTCGTATTG GATGCGGAAG CGCGGTGATT CGCCGGCGGT GGTGCGCAGT
TTCCAGCGGC TGGCGTGGAA GTCGTATGCG CCGCATATCG CGCGTGAGCA GGTGTTGGCG
GAGAGGGGGA TCAGCGCCGC CGAGTACGAG GAGATGCGGG CGCTGGCCAA TTCGAAGCAA
AGCTTCTTCG ACTATGTCTT GGCGCAGTTG CCGGAGTTGG CTGCGGATCT GACGGGTTTG
TCGGATGTTC AGGATTGTTT TTCGGGGAGT CTGGGTTCGT GTGTCGCGGC GATCATCGGT
GCGATTCCGG TGTCGAAGTT GCGGTATGCG GGCAAGATCT TCGATGCGGT GTCGGATGCG
TTCAAGTGGC GGGCCAGGGT CAAGGCCGCT CGTCGGGGTT TCCCGGAGCT TGAGGGTGAG
ATTCGGGCTG AGCAGGCCAA GCTGACGAGT TGTCTTGGGG GGAACAGTTT CGCGCCGGGC
ACTTTGGTGT TGCTGGCCGA CGGTTCGACC AAGCCGATCG AAGAGGTCGA GCTCGGAGAC
CGAGTGTTGG CCACCGACCC CGACACCGGT GAGAGCGAGC CGCAGAAGGT TGTGGCCACG
ATCGTCGGCC ACGGCCACAA GGATCTGGTG GAGGTCACCG TCGATGTCGA CGGTGAGGCC
GGGGATGCGA CGGAGACGAT CACCGCGACC GCGGAGCACC CGTTCTGGGT CGACGACCAT
GGCCGCCTCC TCCAGCCCGC CGCCCACGGC CCGTGGGGCG AGGGCCCGGG CTGGTACGAC
GCCGAAGACC TCGACCCCGG AGACCAACTC CGCACCCCTG ACGGCGACAA AGTCCGGGTT
GTCGACGTCC GTGGTTACAC CGCCACCACC ACGGTCCACA ACCTCACCAT CAACGGCATC
CACACCTACC GTGTGGTAGT AGGCGGCCGG GCCGTCCTCA CACAACGACA ACTGCGAGCT
ACCGAAGGGA TATACATAAT CACCCTCACT CAAAGGGGAT TCTTACCGTC CGGATACAGT
TGA
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| Protein sequence | MVPRRVQRWD GEQYQVSVET TYDAYGRITS RTDAATVVTT HSLRQDGGYN TSYTFYDGFL
RERQSQLPAA GDNKEIPPDP RDDEGSAGSP RGRIVTDTWY DSRGLVWKVN DAYFNNEAPS
DVLLGVGDEA VPHQTITEFD ALERPTAMIF RKLGEEQWRT TNTYGGDRVH IDPPDGDTPV
TVIRNAQGEM VERRQYHGDE PSGEFDATTY TYTPRGELKS VTDPAGNTWS YDYDVLGRKI
SSHDPDSGTT TYVYDELDQL VSTTDERGRT LAYTYDELGR RTAMFEGGPD GTKIAEWTYD
TLKKGLPTAS TRFVDGHAYT TKVASYDEQN RVTSEQVVIP EVEDELARTY TFRTRYFPNS
DLVEAYSMPA AGGLDSEAIG YEYNELGLPT ETYGWDTYAQ EHLYSPYGET LRLTIGEGGQ
RAWVTNYFTE GTRRLDQTIL DRNTETGYRV ADRHYSYDPA GNITRIANAP KDGPQDVQCF
AYDYLRRLTS AHTPASDDCQ AEPAVTGLGG VAPYWVEFAY DESGNRLSEV WHEVEGDTTR
TYEYPSAGQA QPHTLTAVTQ VGPGGTSRDE FAYDAVGNTV SRTVSGDTQL LEWNAESRVE
RVEYADGSQS SYVYDADGNR LLTKDPKRTV LFLPGMELTL DVESGEVTAK RFYEHAGTTV
AVRSSVGGLT MLFGDHQGTA TESIESEPEL SVSRRYFTPF GAPRGERPES WPTDHGFVGG
TRDVSGLTHL GAREYDPTLG RFISVDPIMD LTDPQQMHGY AYSNNSPVTF SDPSGLLMGA
ACGPDGILCG RPAGMDRRDY IETRSYWMRK RGDSPAVVRS FQRLAWKSYA PHIAREQVLA
ERGISAAEYE EMRALANSKQ SFFDYVLAQL PELAADLTGL SDVQDCFSGS LGSCVAAIIG
AIPVSKLRYA GKIFDAVSDA FKWRARVKAA RRGFPELEGE IRAEQAKLTS CLGGNSFAPG
TLVLLADGST KPIEEVELGD RVLATDPDTG ESEPQKVVAT IVGHGHKDLV EVTVDVDGEA
GDATETITAT AEHPFWVDDH GRLLQPAAHG PWGEGPGWYD AEDLDPGDQL RTPDGDKVRV
VDVRGYTATT TVHNLTINGI HTYRVVVGGR AVLTQRQLRA TEGIYIITLT QRGFLPSGYS
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