| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_32350 |
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| Symbol | |
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| ID | 8388559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 3508464 |
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| End bp | 3510350 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644977262 |
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| Product | diguanylate cyclase (GGDEF) domain-containing protein |
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| Protein accession | YP_003135033 |
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| Protein GI | 257057201 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.32989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGCGGC TGCACGGCGA AAGCTTCGGC AGTGAGCGGC ACCCGGCGTT GGGGGACATG
TCCGATGCCT GGGTCCTGGG CCGCGCCCGC GAGTTGATCG CCACCGTGCA GCACACCGAC
CGCACCGGAC AGTTCCGGGT CATCGAGGAT CTCGACGAAC TTCTCGAGGA CACCCGTCGC
CGTGGCGAGC CGATGCTCGT CGCCCAGCTG TTGCGCGCCT CCGGGCTCGC GCGTCTTGTC
ACCCGAGGTC TGGCCGACGA GGCCGAACCC CTGCTCGACG AGATGCTCAC CCACGCCAAA
CGCCACGGCC TCACGTTGTT GCGCGCCGAC GCGCACGCGC TGCGCGGCCG GTTCCTGGTG
CTCAAACAGC AGGAGGACGC CGCTCTCACG GAGATCGCCC GGGCGCTCGC CCTGCTCGAC
GACCTTCCCG AACCCGACGT GCACCTCGGC AGGCGTGCCT GGGACCGCCT GTTGTCGTCG
GCACTGAACG ATTGCTGGAT CGTGCTGAAT CAGCTCGGGG TGTACGAGGC GGCCGAGGAG
GTCATCGCAC GCGCCCACCA GGCGATCCGG GACAGTGCGG GTCCGCACGA GATCGCCCTG
CAACTGATGA ACCGCGTGAA GATGCTGCTG GGCTGGGGAC TGCGCCTGGA ACGCGTCGGC
CGAGTGGAGG AGGCGGGGGA GAAGTTCCGC ACAGCGGCGT CGATAACGAT CTCCGTCGAA
GCCCCGTTCG CCGAATCGTT GTTCCCCCGC AAGCCCGGGG TGCCCGCCGT GGAACAAGTG
GGTGTGCTGG CCGCGTCGCT GGCGCTGGCC GCGCCCTCCG CCGCGCACAT CGACCGTTTA
CGCCGGCTCG CTCGGGAACA GGGTTATCCG CACGAGAAGA TACTCGTCAC CATCGCCTTG
GCTCGCTGCC TCGTCGCGGA CGGCCGCAAG GACGAGGCGT TACGGGTCCT GTGGCAGGTG
CGCCACGCCG AAGCCGAGGA CACCTCACAG CCGTCGATGC GGCTCAACCT CATCCGCGAG
CTCGCCACCC TCTACGCCGA GGATCAGGTC GACAGAGCCG ACGACGTCGA GGGGGTCGGG
GCCGGGACGG AGGAAGGCGA CGAGACCACG GAAGACTCCG GGGACACGGA CGCCGACGAC
CCGCTCGCCA CGTGGCCGTC GCACACGGAG CTGCTCCTCC ACTACGCCAC CGCGTTGGAG
GTGGAGCTGT GGTCGATGCG GGAATCGCAG ATCGCCACGC TCAACACACG TCGTGAGCAC
GAACGTCTGT CCGCCGAACA CGGCGCCATC ACGCAGCAGG CGATGCAGGA CCCGCTCACC
GGACTGCCGA ACCGGCGCAT GCTGGACGAA AGCCTGCGCG CGCTCGCGGC CGCGGACTCA
GCCGAACCCC TGTCGGTGGC GTTGGTGGAC CTCGACGGGT TCAAGGACGT CAACGACCAG
TATTCGCACG CCGAGGGTGA CGCAGTGCTG CGAGTGGTCG CCAGCACCCT GCGGGACGCG
CTGCGCTGTG ACGACATCGT GGCCCGCTAC GGCGGCGACG AATTCGTGAT CCTGCTCCCC
GGCGCACCGA TGCACGCCGC GACACAAGCC TTGACCAGGG CTGTGAATTC GGTCGCTTCA
CTCCCCCAGC ACCTGTCCCG CGGGGTCACC TTGTCGGTCG GGCTGGTGTG CCTTCGGGCC
CAGGAGAGCG CCGAGGAGGT GCTCTCACGC GCCGATGCCG CCATGTACCA GGCGAAGCGC
CGTGGCGGTA ACCGGATCGC GACGAGTTCC TCCAGCGGGG AAGGTCCCGG TCGTACCGGC
GGGGACGCCG CCGATCCCGG CGACAAACGT GGCGACACCC ACTCTCGGAG GGACGACCCG
ACGGCGAACA CCGCCGACCA CACGTAG
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| Protein sequence | MGRLHGESFG SERHPALGDM SDAWVLGRAR ELIATVQHTD RTGQFRVIED LDELLEDTRR
RGEPMLVAQL LRASGLARLV TRGLADEAEP LLDEMLTHAK RHGLTLLRAD AHALRGRFLV
LKQQEDAALT EIARALALLD DLPEPDVHLG RRAWDRLLSS ALNDCWIVLN QLGVYEAAEE
VIARAHQAIR DSAGPHEIAL QLMNRVKMLL GWGLRLERVG RVEEAGEKFR TAASITISVE
APFAESLFPR KPGVPAVEQV GVLAASLALA APSAAHIDRL RRLAREQGYP HEKILVTIAL
ARCLVADGRK DEALRVLWQV RHAEAEDTSQ PSMRLNLIRE LATLYAEDQV DRADDVEGVG
AGTEEGDETT EDSGDTDADD PLATWPSHTE LLLHYATALE VELWSMRESQ IATLNTRREH
ERLSAEHGAI TQQAMQDPLT GLPNRRMLDE SLRALAAADS AEPLSVALVD LDGFKDVNDQ
YSHAEGDAVL RVVASTLRDA LRCDDIVARY GGDEFVILLP GAPMHAATQA LTRAVNSVAS
LPQHLSRGVT LSVGLVCLRA QESAEEVLSR ADAAMYQAKR RGGNRIATSS SSGEGPGRTG
GDAADPGDKR GDTHSRRDDP TANTADHT
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