| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_29970 |
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| Symbol | |
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| ID | 8388321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | - |
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| Start bp | 3240082 |
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| End bp | 3241521 |
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| Gene Length | 1440 bp |
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| Protein Length | 479 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644977028 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_003134802 |
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| Protein GI | 257056970 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.450757 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.317185 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGCGCAC ACCCCGCGGG GCCTCGTCAT GCGGAGGTCT ACCCGCACGC AGACCAGGCA
GGCTTTCCGC CGTCTACTTC GGAGGAGCTG GACCGGCTCT ACCCGAAGGT CTGGCCGCGC
AACACCTACC GCGCTCCCGA CGGCGTCGTC CGGATCGCAG GGGTGGACGT GCGGGAGCTC
GCGCGAACGT ACGGCACGCC GTTGTTCGTG ATCGACGAGG TGGACTTCAA GGCGCGTTGC
GCCGAGTACG CCGAGGCGTT CGAGGACCCG GCGCTGGTGC ACTACGCCGC CAAGGCGTTC
CTGTGCACGG AGGTCGCCCG TTGGGTGGCT GAGAAGGGAC TCAGCCTCGA TGTGTGCAGT
GGCGGTGAGC TGGCCGTCGC GCAGCGTGCG CAGTTCCCGC CCGAGCGGAT CACCTTCCAC
GGCAACAACA AGTCGCTTGC CGAGTTGGAG GCGGCCGTTG AGGCCGGTGT CGGACTGGTC
GTGCTCGACT CCTACTACGA GATCGCGCGC CTGGCCGAGA TCGCGCAGCG ACACGGCGTC
GTGCAGCAGG TGTTGGTCCG GGTGACGGTG GGTGTCGAGG CGCACACGCA CGAGTTCATC
GCCACCGCGC ACGAGGACCA GAAGTTCGGT TTCTCCCTGG CGTCCGGGGA TGCCGCCGAA
GCGGTGCGCC GGGTGTTGAA CAGTCCCTCG CTGAAGCTGG TGGGCCTGCA CAGCCACATC
GGGTCGCAGA TCTTCGACAC CGACGGTTTC GAGGTCGCCG CCCGGCGCGT GGTGGGCCTG
TTGGCGGAAC TGCGCAAGGA ACACGGCCCC GAGCTGATCG AACAGCTGTC CGTCATCGAC
CTGGGTGGCG GTTTCGGCAT CTCGTACACC GATCGCGACA ATCCGCCTCC GCCCGCGCAG
ATGATCACTC AGATCAGGGA GATCGTGCGG AAGGAATGCG CGTTCGCCGA TCTCCCGGTG
CCTCGGATCG CGGGTGAGCC GGGGCGGGCC ATCGCGGGTC CGGGCACGGT GACGTTGTAC
GAGGTGGGCA CCATCAAGGA CGTGACCCTC GGTGAGGGGA CCTCACGGCG GTACGTGAGT
GTGGACGGGG GGATGAGCGA CAACATCCGT ACCGCTCTGT ACGACGCCGC TTACGACTGT
CGGCTCGTCT CCCGGTCCAG TGACGACGGC CAACCGGGTG AGGTGAAGGC GGTGTTGTCC
CGGGTGGTGG GAAAGCACTG TGAGTCCGGT GACATCGTCG TCCGCGATTG TTGGTTGCCG
GACACCCTGG CTCCGGGGGA CCTGCTCGCC GTGGCGGCGA CAGGGGCGTA CTGCTATTCG
ATGGCGAGCA ACTACAACAA GCAGCCGAAA CCCGCTGTGG TCGCGGTCCG TAACGGAAAT
CACAGACTGT TGTTGCGGCG AGAGACGAAC GAGGACATGT TCCGCTTGGA GGTGTCGTGA
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| Protein sequence | MCAHPAGPRH AEVYPHADQA GFPPSTSEEL DRLYPKVWPR NTYRAPDGVV RIAGVDVREL
ARTYGTPLFV IDEVDFKARC AEYAEAFEDP ALVHYAAKAF LCTEVARWVA EKGLSLDVCS
GGELAVAQRA QFPPERITFH GNNKSLAELE AAVEAGVGLV VLDSYYEIAR LAEIAQRHGV
VQQVLVRVTV GVEAHTHEFI ATAHEDQKFG FSLASGDAAE AVRRVLNSPS LKLVGLHSHI
GSQIFDTDGF EVAARRVVGL LAELRKEHGP ELIEQLSVID LGGGFGISYT DRDNPPPPAQ
MITQIREIVR KECAFADLPV PRIAGEPGRA IAGPGTVTLY EVGTIKDVTL GEGTSRRYVS
VDGGMSDNIR TALYDAAYDC RLVSRSSDDG QPGEVKAVLS RVVGKHCESG DIVVRDCWLP
DTLAPGDLLA VAATGAYCYS MASNYNKQPK PAVVAVRNGN HRLLLRRETN EDMFRLEVS
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