Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_28700 |
Symbol | |
ID | 8388194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 3115688 |
End bp | 3116419 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644976901 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_003134677 |
Protein GI | 257056845 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.915743 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0614661 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGGCG TGGAGAGCTC AATGCAAAGG TCCAGCACGT ATGCCGTGAG CCGGTCGGTG CTGGCCGATC AGATCTACAA CGCCTTGCTG CAGTGGCTTA TGGACGGTCG CCTGCAACCC GGTGACCGGG TGAGCATCGA CGGTATGGCG CGTGAGTTCA ACGTCTCACC GACGCCCGTA CGAGAGGCGT TGGCGCGCCT CGAGTCGACC GGGATGGTCG CCCGCGAGGC GATGCGAGGG TACCGAGTCC CGCCTCTGCC CACCGAGAAG CAGATCGCCG ACCTCATGGA CGTGCGCATG ACGATCGAGC CGAGGATGGC CGAGCTGGCG TGCGCCTCCA GGGACGACAC CTTCCTGGAG GAGCTCGAGG TGGCGGTGGC GGACCTGCGG AGCGCCCCGA GCGGCCCGCG CTTCAACGAC TACCGGGACT ACCTCGAAGC CGACGAGCGC TTCCATCGAC TCATAGCGAC ACAGTGCGGC AACGACTACA TGCTCCGCGC CTACGACTCC CTCGGTGGGC ACGTCCAACG CTTCCGGCTC TTTTCCGGGC TCGGCGTGAC GGACGCTGAG TTCGCGGTGG CCGAGCACGC CCACATCTTG GATGCGATAC GGGCGGGGGA TTGCAAAGAG GCGGCGCAAC GCATGCGGGC GCACGTCGCG GCTGTCAGGG ACAGGGCCCT CGCCGACCGC CGCAAGATCG AGCAGACCGC GGCATCCACC GAACTGTCCT GA
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Protein sequence | MDGVESSMQR SSTYAVSRSV LADQIYNALL QWLMDGRLQP GDRVSIDGMA REFNVSPTPV REALARLEST GMVAREAMRG YRVPPLPTEK QIADLMDVRM TIEPRMAELA CASRDDTFLE ELEVAVADLR SAPSGPRFND YRDYLEADER FHRLIATQCG NDYMLRAYDS LGGHVQRFRL FSGLGVTDAE FAVAEHAHIL DAIRAGDCKE AAQRMRAHVA AVRDRALADR RKIEQTAAST ELS
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