| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_27020 |
|---|
| Symbol | |
|---|
| ID | 8388026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | - |
|---|
| Start bp | 2913927 |
|---|
| End bp | 2917481 |
|---|
| Gene Length | 3555 bp |
|---|
| Protein Length | 1184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644976736 |
|---|
| Product | methionine synthase (B12-dependent) |
|---|
| Protein accession | YP_003134513 |
|---|
| Protein GI | 257056681 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
|---|
| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.12372 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.910685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGG ACAGTCGGTT TCTCACCGAG CTGGACCGAC GGGTGCTCGT CGCGGACGGC
GGTATGGGGA CGGCCCTGCA GGGGTTCGAC CTGACGCTGG ACGACTTCGC CCAGCTGGAG
GGGTGCAACG AGGTCCTCAA CGACACCCGC CCCGACGTGG TGACGGCGGT GTACCGCAGT
TTCCTGGAAG CCGGCTCCGA CGCCATAGAG ACGAACACGT TCGGCACCAA CTACGGCAAC
TTCGGCGAGT ACGGCATCCT CGACCGGATC AGGGAGCTGG CCGAGAAGGG GACGGTGCTG
GCACGGCAGT GCGCCGACGA GTACTCGACG CCGGATCGGC CCCGGTTCGT GCTCGGCTCG
ATGGGGCCGG GTACGAAACT GCCCACGTTG GGTCACGCTC CGTACGCAGT GCTGCGTGAC
GCGTACGTCG AGAACGCTCT GGGGATGCTC GACGGTGGCG TGGACGCCGT GTTGGTGGAG
ACCTCGCAGG ATCTGCTGCA GGCCAAGGCG GCGATCGTCG GCGCGAAACG GGCGATGGCC
AGGGCCGGAC GGCGGGTGCC GATCATCGCT CAGGTCACGG TGGAGCAGAC GGGCACCATG
CTGGTCGGCT CCGAGATCGG CGCGGCGCTC ACGGCACTGG AACCGCTCGG CATCGACCTG
ATCGGGATGA ACTGCGCCAC GGGGCCCGCC GAGATGAGCG AACACCTGCG GGTGCTGTCC
GAGCACGCGA GGGTGCCGAT CTCGGTGATG CCCAACGCCG GTCTGCCCGA ACTGGGGCCG
GACGGCGCGG TGTATCCGCT GCGGCCGGAC GAGTTGGCCG AGGCGTTGGC CACGTTCGTC
ACCGAGTTCG GTGTCCGCCT GGTGGGCGGC TGTTGCGGCA CCACCCCCGA GCACGTGCGG
GCGGTGGTGG AGGCGGTGTC GTCGTTGAGG CCGAAGGAAC GGCGGCCCGA GCACACCCCC
GCGGTGTCGT CGGTGTACCA GTCGGTGCCG TTCAAGCAGG ACGCCTCGAT CCTCAACGTC
GGGGAGCGGA CCAACGCCAA CGGTTCGAAG GCGTTCCGCC AGGCGATGCT GGAAGGCCGT
TACGACGACT GCGTCGAGAT CGCCAAGGCG CAGACCCGGG AGGGTGCGCA CGTCCTCGAC
CTGTGTGTGG ACTACGTGGG CCGGGACGGC ACCACGGACA TGGCCGAGCT GGCCTCACGG
CTGGCCACGG CCTCCACGTT GCCGATCATG GTGGACTCCA CCGAGCCCGA GGTGGTGCGG
ACCGGTCTCG AACACTTCGG CGGGCGGTGC GCGATCAACT CGGTCAACTA CGAGGACGGC
ACCGGCCCGG ACAGCAGGTA CCGGCGGGTT CTGGAACTCG CGGTCGAGCA CGGCGCGGCC
GTGGTGGTCA CCTGCATCGA CGAGGAGGGG CAGGCGCGGA CGGCCGAGTG GAAACTGCGC
GTGGCCGAGC GTGCCATCTC CGACCTGACC ACCAACTGGG GCCTGGACAA GTCGTCGATC
ATCATCGACT GTCTCGTGTT CCCCATCACC ACGGGGCAGG AGGAGGTCCG AAAGGACGCC
CTGGAGACCA TCAACGCGAT TCGCCAGCTG AAGCGGCGTC ACCCCGACGT CATGACGACA
CTGGGGCTGT CGAACGTGTC GTTCGGGCTC AATCCGGCCG CTCGGCAGGT GTTGAACTCG
GTCTTCCTGC ACGAATGTCG GGAAGCCGGA TTGGATTCGG CCATCCTGAA CTCGTCCAAG
ATCCTGCCGA TGAACAAGAT CGAGGACGAG CCGAGGCAGG TGGCGCTCGA TCTCGTCTAC
GATCGACGTC GGGACGGCTA CGACCCGCTA CAGCGGCTCA TGCAGCTGTT CGAGGGCAAG
ACCGCGTCGT CGGCGCGTGC CTCGCGGGCC GAGGAACTGG CGAAGCTGCC GCTGTTCGAG
CGGTTGGAGA AGCGCATCGT CGAAGGCGAG ACCACCGGTC TGGAGGAGGA CCTCGACGCG
GCGATGCGGG AGAAGAAGCC GATCGACATC ATCAACGAGC ACCTGCTCGC CGGGATGAAG
GTGGTCGGTG ACCTGTTCGG CTCGGGTCAG ATGCAACTGC CGTTCGTGTT GCAGTCGGCC
GAGACGATGA AGGCGGCGGT GGCCTATCTG GAACCGCACA TGGAAAAGAC CGACGCCGAC
GGCAAGGGCA AGCTCCTGCT GGCCACGGTC AAGGGCGACG TTCACGACAT CGGCAAGAAC
CTGGTCGACA TCATCGTGTC GAACAACGGC TACGACGTCG TGAACATCGG CATCAAGCAG
CCCATCAACG CGATCCTGGA GGCGGCGGAG GAGCATCAGG TCGACGCCAT CGGCATGTCC
GGCCTGCTGG TGAAGTCCAC CGTCGTCATG AAGGAAAACC TGCAGGAGAT GAACGCGCGC
GGGGTCGCGA CGAAGTACCC GGTGCTGCTG GGTGGGGCCG CGTTGACCCG GACCTACGTC
GAAAACGATC TGGACGAGAT CTACGAAGGT GACGTCCGTT ACGCCAAGGA CGCCTTCGAG
GGGCTCAAGT TGATGGACCG GATCATGGCC GTCAAGCGTG GTGAGACCCC GGAGGAGGAC
GCCGCCGAGG AGGCGAAGAA GGCCGAGCGT AAGGCACGTC GGGAACGGTC GTTGCGTATC
GCAGAGAAGC GCAGGGCCGA ACAGGGGCCG GAACCGGATC TGTACGACAC GACGCGCTCG
GACGTCGATC CCGACGTCCC CGTGCCGGTA CCGCCGTTTT GGGGAGCGAA GGTCGTCAAA
GGCGTGGCCG TGGCGGACTA CCTGTCGTTG CTCGACGAGC GGGCGACCTT CTTCGGACAA
TGGGGGCTGC GTGGAGCGAG GAAGGGCGAG GGACCGTCGT ACGAGGAACT GGTGGAAAGC
GAGGGCAGGC CACGGCTGAG GGCGTGGATC GACGAGCTGT CCACCCAAGG CATCCTCGCT
CACGCCGCGC TCGTCTACGG ATACTTTCCG TGCTACTCGG AAGGTAACGA CCTGGTGGTG
CTGGAGAAGG ACGAACCGGA CGCGTTGGAG CGGCTGCGGT TCACGTTCCC CCGCCAGCGG
CGTGATCGCA GGCTCTGTCT GGCCGACTTC TTCCGTTCGA AGGAGAAGGC CGAGCAGACC
GGACAGGTGG ACGTACTGCC CATGCAGCTC GTCACGATGG GCCAACCCAT CGCCGACTAC
GCCAATGAGT TGTTCGCACG CAACGCCTAC CGTGATTACC TGGAGGTCCA TGGGCTCGGC
GTGCAACTCA CCGAGGCGTT GGCCGAGTAC TGGCACCGCC GGATCCGGCA GGAATTGCGG
TTCCCCTCGG GTGCCCCCGT GGCGGCGGAG GACCCGGAGG ATGTGCAGCA GTTCTTCAGG
CTCGGGTACA GGGGGGCTCG ATTCTCCTTC GGCTACGGTG CTTGCCCGGA TCTGGAAGAC
CGCGCGAAGA TCGTGGAGCT GCTGGATGCC GGACGCATCG GTGTGACGTT GTCCGAGGAG
TTCCAGTTGC ATCCTGAACA GTCGACGGAT GCGATCGTGG CCCACCACCC TGAGGCTAAG
TACTTCAACA CTTAA
|
|---|
| Protein sequence | MTMDSRFLTE LDRRVLVADG GMGTALQGFD LTLDDFAQLE GCNEVLNDTR PDVVTAVYRS
FLEAGSDAIE TNTFGTNYGN FGEYGILDRI RELAEKGTVL ARQCADEYST PDRPRFVLGS
MGPGTKLPTL GHAPYAVLRD AYVENALGML DGGVDAVLVE TSQDLLQAKA AIVGAKRAMA
RAGRRVPIIA QVTVEQTGTM LVGSEIGAAL TALEPLGIDL IGMNCATGPA EMSEHLRVLS
EHARVPISVM PNAGLPELGP DGAVYPLRPD ELAEALATFV TEFGVRLVGG CCGTTPEHVR
AVVEAVSSLR PKERRPEHTP AVSSVYQSVP FKQDASILNV GERTNANGSK AFRQAMLEGR
YDDCVEIAKA QTREGAHVLD LCVDYVGRDG TTDMAELASR LATASTLPIM VDSTEPEVVR
TGLEHFGGRC AINSVNYEDG TGPDSRYRRV LELAVEHGAA VVVTCIDEEG QARTAEWKLR
VAERAISDLT TNWGLDKSSI IIDCLVFPIT TGQEEVRKDA LETINAIRQL KRRHPDVMTT
LGLSNVSFGL NPAARQVLNS VFLHECREAG LDSAILNSSK ILPMNKIEDE PRQVALDLVY
DRRRDGYDPL QRLMQLFEGK TASSARASRA EELAKLPLFE RLEKRIVEGE TTGLEEDLDA
AMREKKPIDI INEHLLAGMK VVGDLFGSGQ MQLPFVLQSA ETMKAAVAYL EPHMEKTDAD
GKGKLLLATV KGDVHDIGKN LVDIIVSNNG YDVVNIGIKQ PINAILEAAE EHQVDAIGMS
GLLVKSTVVM KENLQEMNAR GVATKYPVLL GGAALTRTYV ENDLDEIYEG DVRYAKDAFE
GLKLMDRIMA VKRGETPEED AAEEAKKAER KARRERSLRI AEKRRAEQGP EPDLYDTTRS
DVDPDVPVPV PPFWGAKVVK GVAVADYLSL LDERATFFGQ WGLRGARKGE GPSYEELVES
EGRPRLRAWI DELSTQGILA HAALVYGYFP CYSEGNDLVV LEKDEPDALE RLRFTFPRQR
RDRRLCLADF FRSKEKAEQT GQVDVLPMQL VTMGQPIADY ANELFARNAY RDYLEVHGLG
VQLTEALAEY WHRRIRQELR FPSGAPVAAE DPEDVQQFFR LGYRGARFSF GYGACPDLED
RAKIVELLDA GRIGVTLSEE FQLHPEQSTD AIVAHHPEAK YFNT
|
|---|
| |