Gene Svir_25330 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_25330 
Symbol 
ID8387857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2727697 
End bp2728440 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content68% 
IMG OID644976573 
Productribosomal large subunit pseudouridine synthase B 
Protein accessionYP_003134354 
Protein GI257056522 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.411992 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACGACAG CTGACTCGTC CGAAGGCGTG CGCCTGCAGA AAGTGTTGGC CAAGGCAGGG 
GTGGCCTCTC GCCGCGCGTC GGAGGAACTC ATCGCGGCCG GTCGCGTCAG CGTGGACGGG
GTCGTCGTGC GGGAGTTGGG CCGCAGGGTG GACCCGGACA CCGCCGTCAT CCACGTGGAC
GGAATCCGGG TGCAGGTGCG CGACGACCTC GTGTACCTCG CGTTGAACAA GCCCCGCGGG
GTGCACAGCA CCATGAGTGA CGCGCAGGGT AGGCCGTGCG TCGGTGACTA CGTGGCCGAC
CGGCCCGAGC GGCTGTTCCA CGTCGGGCGG TTGGACGCCG ACACGGAAGG TCTGCTGTTG
CTCACCAACG ACGGTGACCT GGCGCATAAG CTCATGCACC CGTCGTTCCA CGTCACCAAG
ACCTATCTCG CCGAGGTCGA GGGCGCGGTG GCGCGAGGAC TGGGGAAGCG GCTGCGGGCC
GGTGTGCAGC TGAGCGACGG TCCGGTGACG GCCGACGCGT TCCGGATCAA GGACGTGCGA
CCGAACCGAT CCCTGGTCGA GATCGTGCTG CACGAAGGAC GCAAACACAT CGTGCGCCGC
CTTCTGGCCG AGGTGGGACA CCCGGTGCGC AAGCTCGTGC GCACCGCCAT CGGCGAGGTT
CGGTTGGGCA CCACCAAGCC CGGCACCCTA CGGACCCTGA CCCAACAGGA GATCGGTCTG
CTCTACCGTG CCGTCGGTGG ATGA
 
Protein sequence
MTTADSSEGV RLQKVLAKAG VASRRASEEL IAAGRVSVDG VVVRELGRRV DPDTAVIHVD 
GIRVQVRDDL VYLALNKPRG VHSTMSDAQG RPCVGDYVAD RPERLFHVGR LDADTEGLLL
LTNDGDLAHK LMHPSFHVTK TYLAEVEGAV ARGLGKRLRA GVQLSDGPVT ADAFRIKDVR
PNRSLVEIVL HEGRKHIVRR LLAEVGHPVR KLVRTAIGEV RLGTTKPGTL RTLTQQEIGL
LYRAVGG