Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_25330 |
Symbol | |
ID | 8387857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2727697 |
End bp | 2728440 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644976573 |
Product | ribosomal large subunit pseudouridine synthase B |
Protein accession | YP_003134354 |
Protein GI | 257056522 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.411992 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACGACAG CTGACTCGTC CGAAGGCGTG CGCCTGCAGA AAGTGTTGGC CAAGGCAGGG GTGGCCTCTC GCCGCGCGTC GGAGGAACTC ATCGCGGCCG GTCGCGTCAG CGTGGACGGG GTCGTCGTGC GGGAGTTGGG CCGCAGGGTG GACCCGGACA CCGCCGTCAT CCACGTGGAC GGAATCCGGG TGCAGGTGCG CGACGACCTC GTGTACCTCG CGTTGAACAA GCCCCGCGGG GTGCACAGCA CCATGAGTGA CGCGCAGGGT AGGCCGTGCG TCGGTGACTA CGTGGCCGAC CGGCCCGAGC GGCTGTTCCA CGTCGGGCGG TTGGACGCCG ACACGGAAGG TCTGCTGTTG CTCACCAACG ACGGTGACCT GGCGCATAAG CTCATGCACC CGTCGTTCCA CGTCACCAAG ACCTATCTCG CCGAGGTCGA GGGCGCGGTG GCGCGAGGAC TGGGGAAGCG GCTGCGGGCC GGTGTGCAGC TGAGCGACGG TCCGGTGACG GCCGACGCGT TCCGGATCAA GGACGTGCGA CCGAACCGAT CCCTGGTCGA GATCGTGCTG CACGAAGGAC GCAAACACAT CGTGCGCCGC CTTCTGGCCG AGGTGGGACA CCCGGTGCGC AAGCTCGTGC GCACCGCCAT CGGCGAGGTT CGGTTGGGCA CCACCAAGCC CGGCACCCTA CGGACCCTGA CCCAACAGGA GATCGGTCTG CTCTACCGTG CCGTCGGTGG ATGA
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Protein sequence | MTTADSSEGV RLQKVLAKAG VASRRASEEL IAAGRVSVDG VVVRELGRRV DPDTAVIHVD GIRVQVRDDL VYLALNKPRG VHSTMSDAQG RPCVGDYVAD RPERLFHVGR LDADTEGLLL LTNDGDLAHK LMHPSFHVTK TYLAEVEGAV ARGLGKRLRA GVQLSDGPVT ADAFRIKDVR PNRSLVEIVL HEGRKHIVRR LLAEVGHPVR KLVRTAIGEV RLGTTKPGTL RTLTQQEIGL LYRAVGG
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