| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_24120 |
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| Symbol | |
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| ID | 8387736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharomonospora viridis DSM 43017 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013159 |
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| Strand | + |
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| Start bp | 2601463 |
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| End bp | 2602704 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644976454 |
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| Product | ribonuclease D |
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| Protein accession | YP_003134235 |
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| Protein GI | 257056403 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0108272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00823573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGGACAACG CAGATCACAG CTCCGGCACG CCGGGGGACT CTGCGCCGCT TCCGCTGACA
GAGCCTGCGG AAGGCACCCC TGACGTCATC GCCGATCCCG ACACGTTGCG GGCGGCGTGC
GAACGATTGG CCGAGGGCAG CGGAGCCCTC GCCGTGGATA CCGAACGTGC TTCCGGCTAC
CGATACTGGC CGAAGGCATA TCTCATCCAG ATCCGGCGCG AAGGCGCCGG CACGTTTTTG
ATCGATCCCA TCCCGTTGAG GGACCACTTC ACACCGCTGG CCGAAGTGAT GAACCAGGTC
GAGTGGGTAC TGCATGCGGC CTCTCAGGAC CTGCCTTGTT TGGCCGAACT CGGTCTGCAT
CCGCCTTCGC TGTTCGACAC GGAGTTGGCC GGTCGGCTCG CCGGCTACCA ACGGGTGGCG
TTGGGGACGC TGGTGGAGTC GCTGCTGGGA TATCAGCTGG AGAAGGGACA CAGCGCGGCC
GACTGGTCCC GACGACCGCT TCCACTCGAC TGGCTGAACT ACGCCGCGCT CGACGTGGAA
CTGCTGCTGC CGTTGCGGGA GAAGTTGGAG GAGGAACTGG CGGCCTCGGG GAAACTCGAA
TGGGCTCGTC AGGAGTTCGA AGCCGTCCGC ACCGCCAAAC CTCCCGCTCC TCGAGCCGAA
CCGTGGCGAC GCACCTCGGG AATCCACAAA GTGCGTACCG CACGGGGCCT GGCGGCCGTA
CGCGCACTGT GGGAGGCCAG AGACGAACTG GCGCGTCGAC GCGACCGGGC ACCCGGCCGC
ATCCTGCCGG ACAGCGCGAT CATCAACGCG GTGTTGGCCG ATGCCCGAAC CTCGGCTGAT
CTGGAGAAAC TCCCCGTGTT CCGAGGGCGG GTCCAACGTA AACAAGCCAC GCATTGGCTC
CGGCAATTAC AGCGCGCACG CACCCTGCCC GAGTCCGAGC TCCCCAGCAC CGCCGTCACG
TACGACGGTC CTCCGCCACC GAACCGGTGG GCCGAGAAGA ATCCGGACGC CGCGGCCCGG
CTGGCCGCGG CGAAAGCCGC GCTGGCCGAC ATCGCCGAGC GGAACCGGCT TCCCGTGGAG
AACCTGCTGC TGCCGGAGCT CGTCCGCCGC CTGTGCTGGC AACCCCCTGA GGACACGTCG
CGGGAGTCCG TGGCCACCGC GCTCGCCGAG GGCGGTGCCC GGCCGTGGCA GATCGAGTTG
ACGGCCGCGG AACTCAGCAA GGCACTGCGC GCACAGGCCT GA
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| Protein sequence | MDNADHSSGT PGDSAPLPLT EPAEGTPDVI ADPDTLRAAC ERLAEGSGAL AVDTERASGY
RYWPKAYLIQ IRREGAGTFL IDPIPLRDHF TPLAEVMNQV EWVLHAASQD LPCLAELGLH
PPSLFDTELA GRLAGYQRVA LGTLVESLLG YQLEKGHSAA DWSRRPLPLD WLNYAALDVE
LLLPLREKLE EELAASGKLE WARQEFEAVR TAKPPAPRAE PWRRTSGIHK VRTARGLAAV
RALWEARDEL ARRRDRAPGR ILPDSAIINA VLADARTSAD LEKLPVFRGR VQRKQATHWL
RQLQRARTLP ESELPSTAVT YDGPPPPNRW AEKNPDAAAR LAAAKAALAD IAERNRLPVE
NLLLPELVRR LCWQPPEDTS RESVATALAE GGARPWQIEL TAAELSKALR AQA
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