Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_24080 |
Symbol | |
ID | 8387732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | - |
Start bp | 2597022 |
End bp | 2598470 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644976451 |
Product | protoporphyrinogen oxidase |
Protein accession | YP_003134232 |
Protein GI | 257056400 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1232] Protoporphyrinogen oxidase |
TIGRFAM ID | [TIGR00562] protoporphyrinogen oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.143554 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0261132 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGGGAA ACGCCGAAGA CGGCCGCCGG CGCGGAGCCC GACCGTCCCG GGTGGTGGTG GTCGGGGCGG GGATCGCCGG CCTTGCCGCC GCGTGGCGGC TTCGCGCCGA ACTGGGAGCG GAAGCGCAGA TCACCGTGTG CGACGCGGCG TCCGTACCCG GGGGGAAGGT GCGGACCGTC GAGGTGGCGG GGCGACGGTT CGACGTGGGC GCCGAAGCCG TGCTCGCCAG ACGGCCGGAG GCGGTGACAC TGATCCGTGA GGTCGGGCTC GGCGACGACC TCGTACACCC GACGTCCGCC TCATCCGCCA TCCGTGCCCT GGGGCGTACG GTGCCGATGC CGAAGGGCAC GATGATGGGC ATCCCGGCTT CGGCCGAGGC GGTGGCGGAC GTGCTGTCCC AGGACGGGGT CGAGGCGGTC GCGGCGGAGG CCGGAGGACC GCCGCTGTCG TTGCCGGACC ACGACGTGTC CCTGGGCGGC CTCCTGCGTA GCCGGTTCGG CGATGAAGTG GTGGACCGGC TCGTCGACCC GCTGCTGGGC GGGGTCTACG CCGGGGGAGC GGACGGACTG GGGCTGCGGG CCACCCTGCC CGCTGTGGCC GCGGCCGTGG ACGCGGGTGC GACGTCGCTG ACCGAGGCGG TCGCCAGGAC GCTGCCGGAA CGGCCCAGTT CGGCGCCCGT GTTCGCGACG CTGCGCGGCG GCCTGGGTGA TCTCGTGGAT CGACTCGTCG AGAGCGGCGC CGTCGAACTC CGCCTCGGAC AGCCCGTACG TGAACTCGTC CGGCGCCCTT CCGGGGGGTG GCGGCTGCGG ACCGGGGCAG CGGCGCTCTC CCATGCCCCC GCCGACGCCG AGTTGGACGC CGACGCCGTG GTACTCGCGG TACCTCCGCC CGCGGCGAGC AGGCTGCTCG CCACAGTGGC CCCGGACGCC GCGTCCGCGT ACGCCGAGAT GGAACTGGCG TCGATGGCGG TCGTCGCCCT GGCGCTGCCT CCCGGCACGG AGTTGCCGCC ATCGTCGGGG ATCCTGATCG GAGAGCGGGA ACGGCGTGCC GACGGTACGC GGTTCACGGC GAAAGCCTTC ACCTTCTCGG CCCGCAAATG GGAGCACCAC AACCGGCCGG GTGAGCCGGT GCTGATCCGA GGATCGGTCG GCCGGTTCGG CGAGGTGAGC ACGCTTCAGG CCTCCGACGA CGAGCTGGTC GAACGCGTGC GCCGTGATCT CGCCGAACTG ACCGGCATCA CCGCCTCGCC GGTGGACACC TACGTCATGC GCTGGGGTGG GGGCTTGCCG CAGTACAGCG TGGGGCATCT CGATCGTGTC GCGCGTATCG AACGGGCCGT CGCCGGGCTC GACGGGCTCG CGGTCGCCGG TGCGGCTCTG CATGGTGTGG GACTGCCCGC ATGTGTGGCC ACCGGGGACG CGGCAGCCCG CCGTGTAGTG GGACAATGA
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Protein sequence | MKGNAEDGRR RGARPSRVVV VGAGIAGLAA AWRLRAELGA EAQITVCDAA SVPGGKVRTV EVAGRRFDVG AEAVLARRPE AVTLIREVGL GDDLVHPTSA SSAIRALGRT VPMPKGTMMG IPASAEAVAD VLSQDGVEAV AAEAGGPPLS LPDHDVSLGG LLRSRFGDEV VDRLVDPLLG GVYAGGADGL GLRATLPAVA AAVDAGATSL TEAVARTLPE RPSSAPVFAT LRGGLGDLVD RLVESGAVEL RLGQPVRELV RRPSGGWRLR TGAAALSHAP ADAELDADAV VLAVPPPAAS RLLATVAPDA ASAYAEMELA SMAVVALALP PGTELPPSSG ILIGERERRA DGTRFTAKAF TFSARKWEHH NRPGEPVLIR GSVGRFGEVS TLQASDDELV ERVRRDLAEL TGITASPVDT YVMRWGGGLP QYSVGHLDRV ARIERAVAGL DGLAVAGAAL HGVGLPACVA TGDAAARRVV GQ
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